Vcam021540.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596063.1:4552888-4559964[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.18 14 7.0 0.6 1 20 234 253 234 255 0.94 2 24 0.056 4.3 8.6 1.6 2 23 286 307 285 307 0.96 3 24 0.11 8.2 7.8 2.3 3 20 339 356 337 358 0.92 4 24 0.013 1 10.6 0.4 1 23 366 389 366 389 0.93 5 24 0.0005 0.038 15.1 6.2 1 23 395 417 395 417 0.97 6 24 0.0011 0.087 14.0 2.9 1 23 424 447 424 447 0.96 7 24 0.00051 0.039 15.1 0.5 2 21 549 568 548 569 0.93 8 24 0.77 59 5.1 0.3 3 23 575 595 574 595 0.93 9 24 0.12 9.5 7.6 0.2 3 23 630 650 628 650 0.93 10 24 0.19 14 7.0 2.3 1 20 653 672 653 674 0.91 11 24 0.0014 0.11 13.7 0.2 1 23 686 709 686 709 0.95 12 24 0.00041 0.032 15.3 1.9 2 23 716 737 715 737 0.96 13 24 0.12 9.2 7.6 1.7 5 23 747 765 745 765 0.97 14 24 0.0026 0.2 12.8 0.7 1 23 771 794 771 794 0.96 15 24 0.00085 0.066 14.3 0.9 3 23 804 824 803 825 0.96 16 24 2.2e-05 0.0017 19.3 0.3 2 20 933 951 932 953 0.93 17 24 0.0002 0.015 16.3 0.1 2 23 959 981 958 981 0.95 18 24 0.00025 0.019 16.0 0.5 2 23 1015 1036 1014 1036 0.96 19 24 0.33 25 6.2 0.2 2 20 1040 1058 1040 1060 0.91 20 24 4.9e-05 0.0038 18.3 0.5 1 23 1086 1109 1086 1109 0.95 21 24 0.009 0.7 11.1 0.5 1 23 1115 1137 1115 1137 0.92 22 24 0.014 1.1 10.5 0.1 1 23 1143 1165 1143 1165 0.98 23 24 0.017 1.3 10.3 0.2 1 23 1171 1194 1171 1194 0.93 24 24 0.00019 0.015 16.4 1.3 1 23 1200 1223 1200 1223 0.96
Sequence Information
- Coding Sequence
- ATGACTCGACAAGTAGACGTTAAGTCTTTAGTATCACATATTGTGCGAGGAGACGGCTTGGATAAATGCAGGATATGCATGGGAGATACTTCACAAGGGCAAGTCCACATAACCGATACAGTAATGATGGATGGGGAAAAAGCCGTGACGTTAACTGAGCTTCTCGTTGTTATAACCGGAGTTGAGGTGGAGTGGGATGAAGCCCTACCGTCTACCATATGCCTAACGTGCTCCATATCTGCCCTTGAGGCAGCCGAGTTCCGGAACTTTGTGCACAAAACACACCAACAATGGATCAAAGCATTTCAGTCTCTAGAGAGACTTGCTGATCACAAGTACTCAGCAACAACCAATAGGGTTATGGCTACTATGGAGAACACGCCGGAAATGCCGCAGCAAATATGCTGTCACTGTATGTCACACATCACAACGTTTCTGCCTTTCCTAAAGATTTGCCGAGAATCCGCCGCGCATTGGAGCTATTTAGCCgacataattattgatattccCATCCATACTAAAGCAACTGCTTTTATCGTTATCACTGATAAAGTAGTTCCTTTTGTAGAGCGAAAAAAGATAAAGCACTTAAAAAATGCTGTTGCACGGGTTAACCGCCTTCGGAAACAGCATAAGTGGCAGCTGGCTTTAGGGAATCATTTAGAAAATCAGTCTAATATCAAAACTAATGCTTATGATTACACATGTGGTGAATGCGGCTCAAAATATAAACAGTTGCGCAAGATAAATCATCATTTAGCTAACCAGGGCAAAAGACTTTGCAAGTACTGCAACAACATAGTTGATCTGAAAAGTTTTGGACAGCACTTGAAAATGCATTCAGTCCAATTTCTCGAATGCGATACTTGCGCGCTTACATTTCATACCGAACAGCAGTTAGTGACACATCGAAAGAGCCATGTAGGAAGGAATATGTGCGTAGAATGCATGAGAGCTTTCCCAACACCAGATATCCTAACTCTACACGCCCACAGGATACACCAGCCAGATATCTGCAACAACTGCAACACAAAATTCTCCAATCGAATTTGTCTGTACAATCATAGATATCGATGCAAAGTAGTTCAGAAAACATACATTTGCGATTACTGCACTAAAGAGTTCAATGATAGAACTGTTATCAAATCCCACATTACATTAGTGCATTCGAAAAAGCTTATGCACCAATGCGAAAAGTGTGGTAAGAAGTTCAACAGTGCTTGCCATTTAGAAGAGCATTACGAATCACATGACGTGATACCAGATAGACACGTGTGTCAGTACTGTGAAAACACCTACAGCACGTCTGGTGGGTTTCGGAGGCATATGAAACTGAAGCATTTCAACGTCGAGGACGACCCGGTTCTCCCGCCGGGGCTCTGCCTCGCGTGCTCCGAAGACCTCGTCGTCGCCGCCACCTTCAAACATCTGTTCAATAAGTCCGCTCAACAATGGACGCAGGCGATCACCTTCCTCTCGAATATACATGCCGAAAACGAAGATAAAACCCTATTCGTCATGTGCAAAGATAATCACTTCATATTAAGCGAGAGCAAAATTGAAACTATGCAATCGGCATTGACCACTTTGGGAAACATATCAAAAGCGAACAAGACGATAACAAAACAAGAAGAATTCCATTGCGCTTGTCCTTATTGTGACAAACTATTCTCTAATACATATGCTTTAAACGAGCATATCAAAAATGGCAGCACGAGGATATGCTCTGCATGTGGTTTTGTCGTAACTAAATCGAAGCTATCGTCACACTTGCGCttgaatcataaaataaaaacaatagagTGTAACATCTGTTACGATCTATTTAGCAGTTACGAAGAAGCAACCTCGCATGCGCAGCAATGCCATGGCCCTGATTCCATCGCATGTTATGTTTGCAGACGCGGATATAGAAACGAGAGAGCTTTACGAGCACATTCGTATTCCCATAACCTGTTCTCTTGCATCGACTGTGGCCAATCCTTTGAGAACAACGGCTGTTACAAACACCACAAAATATCTTGCAGGCCTTTGTTCAAATCGGGAATTAAATTATTCGAATGCAACGAATGCGGTCTCCAATACGACAAGAAACCTTCCCTCAAAATACACATCATCCAAAAACATTTAAACGTGCTTCCGATCACTTGCCAGACTTGCGGCAAACGTACATCCACGTTGGGTCATTTGAGATCGCATGAAAAAATTCACGATAAGGATAGGAAGATGATGCAGTGCCATTGCGGGGCCAAATTCCGCTCTGAACTCGGCTTCCGATTGCATATGAGGGTCCATAGTGGAATAAAGCCATACAAGTGCACGGAATGCGATGAGTCTTTCATATCGGCTTCTCGGCGTTTGGATCATGTGAAACGACGGCACAAGGGCTCGAAGGCAATGGCTCATGGGTGCAAGCAGTGCCCTGCTCGATTCATCCGCCCTTGGGAGCTAAAAAAGCATTACATGCAACATCATAGCTCAATAGTCGATATAGAAGAGGAGATCGAGTGTCCTTCTGTGGTATGTGTAACATGCGCAAGCGCCGCGCTAGCCGCCGCTGAGTTTCGGCTTCTAGTGCAGGATGCTCACCGCGCGTGGCGACGGGCCCTTACCAACCTCGCGCGACTCCCACTCGTCTCCACCGCGAAAGCTCTCACGGCGCGAATTTCCCATGACTTAAACCTCGACCTACACGACGACTTCCTCGGCGGTCATCCGCACGTCGTCGTCAACCGATCCCTCTCTAAAACTTCCAGGAAACGCAAACCGAGAGTCATCCACGCCGGCCCCACCGTCTCCTGTCCTGACTGCTCCAAAACCTTTAACAACCCGCACCAGCTTCGAGCGCATTTATCCAACAGCGAGATCAAAGACTCTTGCCCGACCTGTGGAAAAGTTACAACTAGAGGCGAGGAGTTGAAAAAACATTTGGAGTCAGTTCACAAGAAAGCCAGTTACTTGTGCCAGCTATGTCGTACGGTTCACTTGAGCGCGGATGCTTTGGCTTCGCACGAAGCAGTAGCGCATCGCCCGGGCGCATTGACCTGCAATGCTTGTGGACGCAACTTTTCGAAACAGAGCTCTTACACCGCTCACGCACAAATGCATTTGGTTAGGACTTGCCGCGCGTGCGGCGTTTCGTTCGCGTCGCGTGGTTGCTACCGAGCACATAGAGCTATTTGTGAGCCGGATGCCAAGCCGGTCGCTCGCTCTATGCCGCGCGCGCGTCGCGCTAACAACCGCGATCCCGGCCGCTACGAATGCGCGCACTGCACTAAAGTCTACACCTCTCGACCTCAACTGCAAAACCACATCCTTTGGATCCATATGGACCATCGTCCCCACCAATGCGCGGTTTGCGGCAAACGGTTTTATACGGTCGCGCGTCTCACGGAGCATTCCGTCGTTCATACTCGCGAGCGTCGTTTCGAATGCGACATCTGCGGCGCAAAACTCGTATCAAAAAGCGCGGCTGTGTACCACCGACGACGACATACGGGTGAGAAGCCCTACGCGTGTGAAGATTGCGGGGCTACGTTTATTTCTTCCTCGCGGCGCCTAGAACATGCAAAGAGACGACATAACAAAGGTTCACGCTTTCACTGCCCGTCCTGCCCGGCCAGCTTTGTGCGACGGAAGGAGCTGGAGCGGCACCAAGATAAGAATCATAAGCAAGAGATGCCCGATGATGGTTCTGAACATAGCAAACAAAATCAAAAGCTGTCCGAGTCCGAACCTAAACAGCAAGTGCTTAGAAGAGGTTCTAAGCTTAAACAAGAACAATCAAATCGTGATACAAAAAACACCGACCTTGTTATCTGTAGCATGtga
- Protein Sequence
- MTRQVDVKSLVSHIVRGDGLDKCRICMGDTSQGQVHITDTVMMDGEKAVTLTELLVVITGVEVEWDEALPSTICLTCSISALEAAEFRNFVHKTHQQWIKAFQSLERLADHKYSATTNRVMATMENTPEMPQQICCHCMSHITTFLPFLKICRESAAHWSYLADIIIDIPIHTKATAFIVITDKVVPFVERKKIKHLKNAVARVNRLRKQHKWQLALGNHLENQSNIKTNAYDYTCGECGSKYKQLRKINHHLANQGKRLCKYCNNIVDLKSFGQHLKMHSVQFLECDTCALTFHTEQQLVTHRKSHVGRNMCVECMRAFPTPDILTLHAHRIHQPDICNNCNTKFSNRICLYNHRYRCKVVQKTYICDYCTKEFNDRTVIKSHITLVHSKKLMHQCEKCGKKFNSACHLEEHYESHDVIPDRHVCQYCENTYSTSGGFRRHMKLKHFNVEDDPVLPPGLCLACSEDLVVAATFKHLFNKSAQQWTQAITFLSNIHAENEDKTLFVMCKDNHFILSESKIETMQSALTTLGNISKANKTITKQEEFHCACPYCDKLFSNTYALNEHIKNGSTRICSACGFVVTKSKLSSHLRLNHKIKTIECNICYDLFSSYEEATSHAQQCHGPDSIACYVCRRGYRNERALRAHSYSHNLFSCIDCGQSFENNGCYKHHKISCRPLFKSGIKLFECNECGLQYDKKPSLKIHIIQKHLNVLPITCQTCGKRTSTLGHLRSHEKIHDKDRKMMQCHCGAKFRSELGFRLHMRVHSGIKPYKCTECDESFISASRRLDHVKRRHKGSKAMAHGCKQCPARFIRPWELKKHYMQHHSSIVDIEEEIECPSVVCVTCASAALAAAEFRLLVQDAHRAWRRALTNLARLPLVSTAKALTARISHDLNLDLHDDFLGGHPHVVVNRSLSKTSRKRKPRVIHAGPTVSCPDCSKTFNNPHQLRAHLSNSEIKDSCPTCGKVTTRGEELKKHLESVHKKASYLCQLCRTVHLSADALASHEAVAHRPGALTCNACGRNFSKQSSYTAHAQMHLVRTCRACGVSFASRGCYRAHRAICEPDAKPVARSMPRARRANNRDPGRYECAHCTKVYTSRPQLQNHILWIHMDHRPHQCAVCGKRFYTVARLTEHSVVHTRERRFECDICGAKLVSKSAAVYHRRRHTGEKPYACEDCGATFISSSRRLEHAKRRHNKGSRFHCPSCPASFVRRKELERHQDKNHKQEMPDDGSEHSKQNQKLSESEPKQQVLRRGSKLKQEQSNRDTKNTDLVICSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -