Vcam023347.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venusia cambrica
Gene Symbol
-
Assembly
GCA_951394065.1
Location
OX596066.1:3806149-3808437[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00063 0.048 14.8 10.1 1 21 10 30 10 34 0.91
2 20 0.003 0.23 12.6 0.8 2 23 40 62 39 62 0.94
3 20 8.9e-06 0.00069 20.6 0.1 2 23 71 93 71 93 0.97
4 20 2.4e-08 1.8e-06 28.7 1.6 2 23 102 124 101 124 0.97
5 20 1.9e-05 0.0014 19.6 1.2 3 23 133 154 132 154 0.94
6 20 8.9e-06 0.00069 20.6 1.7 2 23 162 184 161 184 0.96
7 20 1.4e-06 0.00011 23.1 2.1 1 23 190 212 190 212 0.98
8 20 0.84 65 4.9 0.8 2 23 247 269 246 269 0.92
9 20 0.014 1.1 10.6 2.0 1 23 296 318 296 319 0.96
10 20 0.22 17 6.8 0.7 2 21 327 346 326 347 0.93
11 20 0.0099 0.77 11.0 0.7 3 23 357 378 356 378 0.95
12 20 0.0046 0.36 12.0 1.2 2 23 402 424 401 424 0.95
13 20 0.00027 0.021 15.9 2.1 2 23 431 453 430 453 0.96
14 20 0.28 22 6.4 1.1 5 23 461 480 455 480 0.84
15 20 0.0067 0.52 11.5 1.5 1 23 486 509 486 509 0.97
16 20 0.65 50 5.3 2.7 2 23 517 539 517 539 0.96
17 20 0.00036 0.028 15.5 0.7 1 23 546 569 546 569 0.96
18 20 0.016 1.2 10.4 1.2 1 19 576 594 576 599 0.92
19 20 0.001 0.08 14.1 2.9 3 23 613 634 612 634 0.92
20 20 0.048 3.7 8.8 0.7 1 12 681 692 681 695 0.90

Sequence Information

Coding Sequence
atggcGCATACATTACATAGAAACGAGTTCTGCTGTGATTATTGTAACCGCTCCTTTACTAGGAAGCACAATCTCCAGACTCACATAGAACACAGCTGCCAtagcaaaacattttgtttttgtgaaatatgCAACTACGTGTTTGGTAGCCCGGTCAGACTTCAGACACATTTATCCCGAGGACACAACAGGTTTGGCAAGCCATCCCCAGAATGTGATATTTGTGGACGCATTTTTAATCGAAAGCAGAACATAACGGCTCACATGATCACTGCTCATCTTCAGCATCTCTGTCCCAAAATCAAATGCGAAATTTGTGACAGAAGTTTTACTACCAACAAAAACCTGAAACGGCACATGAAGATGCTCCACAATCCTAACATTGAGTATCCCATTTGTGATGATTGCAACAAGACTTTTAAGTCTAAACACTCCTTATTAGCTCACTACCAAGCAGTCCACAATAGAAACAAGAAACTTAAAAGATGCAATCTGTGCGAAAAGGTATATTCAAGTAATAGAAACCTGAAAAGGCACATCGATACATTCCATGGGGAAAAAGAGGAACACAGATGTGAAATCTGCCCTAAAGTATACCCTTCTAAACAGAGTTTAAAACGTCACCTTAAAACACATGAGACTTGCGAAGAACCAGAATCTGATAGCAATTTTATTGTGGATGACATTGAtacggatgatgatgattctgataACTATGACAGTAAGATGTATGCTTTCTTATGCTCTGCATGCCATGAACCATTTAACCAAGAACAAATACTCAGACAGCATGTAAAAGTTAAGCATTCATTTGAAACATTCTATGAATATTGCAAGGAATATCTACAGAGGTTGAAGGATAATCGGCCATTGATACAGAGAGTTTACAAATGCGAGTTTTGTTTCTTGGCTTTTCTTAATGTTTATGAGCTTAAAGACCACATGAAAGTTCACCACTTTTTTGATTTCTGTCTGTCAACTTGCAATGTGTGCTATACCAAGTTCTACAGTAAGGAATTTATGGTGCAGCATAGAAAGATATGCCTGCCCCCGCCCAATGTAAATTCTTGCAGATATTGCGACAAACTTTTCACAGATATATCCAGCTTGGAGTTTCACCTTAGGATCTTTCACCCCCAGTCTCAGATCTCGGACAATGTTATATCATCAACTAAACAGGTCATGAAAACGACAGAGTCATTAAATTGTAGTCAATGCTCTCGCATATATTCCAGTATGCAATATCTCAAGATTCATATGAAGCTGAAGCACACGGCTGATGAGAAAGTGGAGTGTGAAGAATGTGGGCAGGTCTACAGCAACAAACACTGCCTAGCCTCACACTTTAAGACCATTCACAGCTCATGTGCAAAGAGCGACTActgtgaaaaaatattaaggacCAAAACAAAGATGCGTAGACACATTGAATTCAAACACACCGGTTTGCGACAGTACAAGTGCATAGATTGCGGAAGTTTCTACAAAGATTTATTAAACTTACGTAAGCATGTGAGAAGAAAACACAAAGATTCCACCAGCTTTCCTCAATGCCACATCTGCAACAGTCTGTTTGATTCCGCCAAGTCTCGCAAGACGCATTTAAAGCAGGtccataatttaataattagtacATACCCTTGTCATCTTTGTTCCGTATCGTTCGGATCTAAAGAATCTTTAAAAATCCATCTTGCTTCGAAACACTTAGATGAAAAAGAAACTTACAAATGTGAGGAATGCAACTTGGTATTCAAAGGTTTGCGAAAGTTCAAGCAACACAATGTTGGTAAGCATGAAGGTCATAGTACTCCGATACAGAAAAAAACCCCACAATGCATCAAGTGCTTTAAAGATTTCAGCACAAAGAAGAACCTGAAAAGTCATATCAAGAGATTGCACACAGACTCTGAGGTTGAAGAAATAAAGAATTCATTGAAAAATACAGAGGCAAACTGTGATGattgcatcaaaagttttaCCGATGACCACAccataaaaatgtttgataCAATAAAAGATTCCAATGACCGTAGAGCATATGAGTGCAAAACTTGCGGAAGATCATTCAACTCTATGGAGTTTGCAGAGCAACGGCAGAAGTTCTCGGCAGTTCACAAGTCCAAAACCATGCTTAGCGAGTTGTGTACTGCTGAAATGAGTGATACATCGTGTACAGGCTATGGAGCCTTGCAACAGCATATGGAACCGGAGAGCACTACCTCTGAAGTTAAACTGGAACCTTTGGATGATGTTATGATTTTCAAGGCAGAACCTATGTCCCCATGA
Protein Sequence
MAHTLHRNEFCCDYCNRSFTRKHNLQTHIEHSCHSKTFCFCEICNYVFGSPVRLQTHLSRGHNRFGKPSPECDICGRIFNRKQNITAHMITAHLQHLCPKIKCEICDRSFTTNKNLKRHMKMLHNPNIEYPICDDCNKTFKSKHSLLAHYQAVHNRNKKLKRCNLCEKVYSSNRNLKRHIDTFHGEKEEHRCEICPKVYPSKQSLKRHLKTHETCEEPESDSNFIVDDIDTDDDDSDNYDSKMYAFLCSACHEPFNQEQILRQHVKVKHSFETFYEYCKEYLQRLKDNRPLIQRVYKCEFCFLAFLNVYELKDHMKVHHFFDFCLSTCNVCYTKFYSKEFMVQHRKICLPPPNVNSCRYCDKLFTDISSLEFHLRIFHPQSQISDNVISSTKQVMKTTESLNCSQCSRIYSSMQYLKIHMKLKHTADEKVECEECGQVYSNKHCLASHFKTIHSSCAKSDYCEKILRTKTKMRRHIEFKHTGLRQYKCIDCGSFYKDLLNLRKHVRRKHKDSTSFPQCHICNSLFDSAKSRKTHLKQVHNLIISTYPCHLCSVSFGSKESLKIHLASKHLDEKETYKCEECNLVFKGLRKFKQHNVGKHEGHSTPIQKKTPQCIKCFKDFSTKKNLKSHIKRLHTDSEVEEIKNSLKNTEANCDDCIKSFTDDHTIKMFDTIKDSNDRRAYECKTCGRSFNSMEFAEQRQKFSAVHKSKTMLSELCTAEMSDTSCTGYGALQQHMEPESTTSEVKLEPLDDVMIFKAEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-