Vcam023149.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:1016141-1027465[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00086 0.066 14.3 4.3 2 23 323 344 323 344 0.97 2 20 8.1e-05 0.0063 17.6 1.0 1 23 350 373 350 373 0.96 3 20 0.011 0.86 10.8 2.7 1 23 377 399 377 399 0.98 4 20 0.0051 0.39 11.9 8.0 2 23 405 427 404 427 0.94 5 20 0.19 15 7.0 0.9 1 23 431 454 431 454 0.93 6 20 0.38 30 6.0 3.7 2 23 458 479 457 480 0.93 7 20 0.081 6.3 8.1 1.4 1 23 485 507 485 507 0.88 8 20 4.8e-05 0.0037 18.3 2.1 1 23 513 535 513 535 0.96 9 20 5.8e-05 0.0045 18.0 1.3 1 23 540 562 540 562 0.97 10 20 0.0018 0.14 13.3 0.2 1 23 568 590 568 590 0.97 11 20 2.3e-05 0.0018 19.3 4.2 1 23 596 618 596 618 0.96 12 20 3.2e-05 0.0025 18.8 3.1 1 23 625 647 625 647 0.98 13 20 0.0049 0.38 11.9 0.8 1 23 653 675 653 675 0.96 14 20 3.2e-05 0.0025 18.8 1.4 1 23 681 703 681 703 0.98 15 20 0.00071 0.055 14.6 3.6 1 23 709 731 709 731 0.98 16 20 0.0055 0.42 11.8 0.5 1 23 737 759 737 759 0.98 17 20 0.0016 0.12 13.5 3.5 1 23 765 787 765 787 0.98 18 20 0.072 5.6 8.3 0.3 1 20 791 810 791 814 0.90 19 20 0.0015 0.12 13.6 0.0 1 23 820 842 820 842 0.98 20 20 0.0065 0.5 11.6 0.1 1 23 848 871 848 871 0.93
Sequence Information
- Coding Sequence
- ATGTCGCATCTAATGGTATGCAGGGTGTGCCTAGCTGGCAGTGTGAAGGTTTATTCCATTATAAATACGCCTCTCCAAGCTATTTATGAAATACTTACAAACATTCAGCTTTGTACCAGCGACCACAGACCTAACACCGTGTGCTACCTGTGCTGTTCCCAGTTGGAACAATGTCGCAGATTTCAAGACAAGTCACTCAAATCTGAAGATATATTGACTGAACTGTTTCGTAACAATATTGAGATAACTCCCTCTACAGTGGCTGTCCTAAACAAAGAAATTCGGCAAAACTTTTGCGTCGCAACCTTAGACCCGGTCTCATACCGACAGCATGTGGATACAACGAGTCTAATCAAAAAAGAGCAGTTTGAAGTGGACGATATGGTGTTAATTGACAAAACTGAAGCGGAAGATGTCGCCACCGTGTGCCGTGCGTGTCTGTCGGCAGAGGTCGCGACGAGACCGATGTGCGGCGAGCTGCGAGGGATGTACGAGAGACTCGCTCGCACCGAGCTGGGTGCGGGCGTCGGGCGACCGTCGGGCGTGTGTTACATCTGTCTGTCACAACTGCGGAGGTGGCGTGCACTGGTCGCGCGCTGCGACCGCTCCGAGGGCGTGTTGTCGGAACTGTTGCACAACGGCGTTCAGCTAACGCAAAGCATTATATCAAAgctgaataataataagaaacgtATTTACCTGCGGACCGCCGTCCGGATCACCAGCTACACCCCATCTCGGGAGATCTCCCCATCTCGGGAGATCTCCCCATCTCGAGAGATCTCCCCATCTCGAGAGATCTCGGTCAAACTTGAAGCTTCTGAATCGGATACAGAACACGCTTACATCAAAATAGAAGGCACACCGCTGACGGAACCAGTTTGCCCAGGCAAAGAGTCACCAGATCACGCCAATGAGTTGTGTGACCCGGAAACGAGACCAAACACAGTTCATATGGACTTGGAACGTTGCGGCGTGTGCGACTACACTTGCAACTCGAAAGACAAACTGAAAAAGCATCGGAGGCTACACGACCCGCGGCGACGGTTCGTGTGCGATCTTTGCACACGCCGGTACAAATCATCCAGCAATCTGAGCGCGCACAAACTCAAGATCCACGCAACTAAACACGAATGCACCCAATGCCAGAGTGTATTCAACACACTGCGCAGGCTGAATTCCCATTTACTGACACACAGAAAGGGACTTCTGTCTTGCGAGATATGCCGAAAAATGTTCAAACACAGAAAACATTTGCGAGAGCATTACCACAGCACGCACGACGCGAAGCACGCATGTCCGCAATGCCCCTACACGTCGACCAGTTCGGAATGGGTGCTCGAGCATGTACATAAGTCGCACAACCGTTGCGTCTGCGACGTTTGCCACGCGTCGCTTTCCGGCCGCAAAGCGATGAAGCGGCACCTGATAAACCACCACGAAATCAAACCGTTCAAATGTGAAACTTGCTTCAAAACGTTCGCGACCCGACAAATTGTCAATTTGCACACGCTGTCCCACACGGGGGAGCGCCCCCACGCTTGCGGGATCTGCGGCAAACGGTACCGGGAGAAGAGCTACTTGAAAACTCACTACGACACCCACGGCGAGAGGAAGTACGAGTGCAATGTGTGCGGGCGACGGTTCCATCGGAAGTCGATCCTACAAAATCATATGATCGCGCACACGCCGGAGAAACTGTTCGCGTGCGACATTTGCGACGCCAAGTTTCTGAGACGCTCCTACGTCATCAAGCACATGGCGACGCACTCATCACGCAAACCGTACAACTGTCACATCTGTCAGCGGAGCTTCAAAACGCGCAGCACACTGAAAACGCACTCGCTAGTCCACAGCGGACACGCGAAAGCGTACACGTGCGATATCTGCGGGAAACAATTCTCGAGGAAATGCTACCTCGTCGGCCACCTGCGGTTCCACTACGGCGTGAGACCGTACCCCTGCGACTTCTGCGACAAACGGTTCGCGACGAAAGAGATACAGCGCGCGCACAGCCGGACCCACACCGGGGAGAAGCCGTACGTGTGCCAACTGTGCGAGAGAGGATTCTCGCAAAGTTGCGCTTTGAAGCGGCACATCAAAGCGCACGCGCAAGAGAAACCGCACCAATGCTCGGTGTGCGGCCGCAGGTTCGCGGAGAAGCTGTCCCTGCGCGCGCACAAACACACGCACCGATCCGGCGGGACGTACATCTGCGACCGTTGCAACAGCGTGTACATCGACCGGGAGAAGTTCGTGCGGCACGTGCGTTCGCACAAGTCGAGGGCCCCGTACCGCTGCGAGACGTGCGGCAAGGCGTTCCAGAAGCTCTGCACGCTGACGCAGCACGCGAAGTACCACGGGGGTGAGTTCCGCTGCGGGTTCTGCGAGGCGCGGTTCGCGGCGCAGTACCAGCTGTACCGACACAACGCGGCGGAGCACGCGGCAGTGAAACGGTACGCCTGCAACGTGTGCGAGGAGGCGTTCGACGGACTGGTGCGACTCAACGCGCACCTGCGGACCCACTCGGGGGCCAAGCAGTACGCTTGCGAGATGTGTCCGAACACGTACGTGGAGCGACGGGACCTGCTGCGTCATATGACGGCGGTGCACCGGTACTCCACGGTGTTCTGA
- Protein Sequence
- MSHLMVCRVCLAGSVKVYSIINTPLQAIYEILTNIQLCTSDHRPNTVCYLCCSQLEQCRRFQDKSLKSEDILTELFRNNIEITPSTVAVLNKEIRQNFCVATLDPVSYRQHVDTTSLIKKEQFEVDDMVLIDKTEAEDVATVCRACLSAEVATRPMCGELRGMYERLARTELGAGVGRPSGVCYICLSQLRRWRALVARCDRSEGVLSELLHNGVQLTQSIISKLNNNKKRIYLRTAVRITSYTPSREISPSREISPSREISPSREISVKLEASESDTEHAYIKIEGTPLTEPVCPGKESPDHANELCDPETRPNTVHMDLERCGVCDYTCNSKDKLKKHRRLHDPRRRFVCDLCTRRYKSSSNLSAHKLKIHATKHECTQCQSVFNTLRRLNSHLLTHRKGLLSCEICRKMFKHRKHLREHYHSTHDAKHACPQCPYTSTSSEWVLEHVHKSHNRCVCDVCHASLSGRKAMKRHLINHHEIKPFKCETCFKTFATRQIVNLHTLSHTGERPHACGICGKRYREKSYLKTHYDTHGERKYECNVCGRRFHRKSILQNHMIAHTPEKLFACDICDAKFLRRSYVIKHMATHSSRKPYNCHICQRSFKTRSTLKTHSLVHSGHAKAYTCDICGKQFSRKCYLVGHLRFHYGVRPYPCDFCDKRFATKEIQRAHSRTHTGEKPYVCQLCERGFSQSCALKRHIKAHAQEKPHQCSVCGRRFAEKLSLRAHKHTHRSGGTYICDRCNSVYIDREKFVRHVRSHKSRAPYRCETCGKAFQKLCTLTQHAKYHGGEFRCGFCEARFAAQYQLYRHNAAEHAAVKRYACNVCEEAFDGLVRLNAHLRTHSGAKQYACEMCPNTYVERRDLLRHMTAVHRYSTVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -