Vcam012816.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596048.1:2777569-2789972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.012 0.89 10.8 1.5 3 23 211 232 210 232 0.92 2 24 3.5 2.7e+02 3.0 0.1 6 23 595 614 595 614 0.90 3 24 0.057 4.4 8.6 0.6 1 21 619 639 619 640 0.96 4 24 6.1 4.7e+02 2.2 0.4 1 23 680 703 680 703 0.90 5 24 0.0003 0.023 15.8 2.8 3 21 714 732 713 733 0.95 6 24 0.21 16 6.8 0.1 3 23 742 763 740 763 0.93 7 24 0.078 6 8.2 0.6 3 23 782 803 780 803 0.95 8 24 0.0014 0.11 13.6 1.9 1 23 808 831 808 831 0.94 9 24 0.11 8.4 7.7 0.0 1 23 857 880 857 880 0.90 10 24 0.016 1.3 10.3 3.4 1 23 885 907 885 907 0.97 11 24 0.59 46 5.4 0.2 1 23 913 936 913 936 0.95 12 24 0.007 0.54 11.5 0.9 1 23 950 972 950 972 0.97 13 24 0.00015 0.012 16.7 1.8 1 23 1024 1047 1024 1047 0.97 14 24 0.00042 0.032 15.3 1.2 1 23 1105 1128 1105 1128 0.95 15 24 0.0026 0.2 12.8 2.2 2 23 1154 1176 1153 1176 0.95 16 24 0.017 1.3 10.2 0.1 2 23 1182 1204 1181 1204 0.94 17 24 0.0011 0.083 14.0 0.7 1 23 1246 1269 1246 1269 0.97 18 24 0.0009 0.07 14.3 0.2 1 23 1277 1299 1277 1299 0.93 19 24 6.7e-05 0.0052 17.8 0.5 2 23 1389 1411 1388 1411 0.93 20 24 2.9e-07 2.2e-05 25.3 1.4 3 23 1418 1438 1417 1438 0.98 21 24 0.0021 0.17 13.1 0.4 1 23 1458 1480 1458 1481 0.95 22 24 0.28 22 6.4 0.0 1 23 1505 1527 1505 1527 0.97 23 24 0.042 3.3 9.0 0.3 1 23 1533 1556 1533 1556 0.93 24 24 0.00032 0.025 15.7 0.4 1 23 1564 1587 1564 1587 0.96
Sequence Information
- Coding Sequence
- ATGACTGTGAACTATGATCGTGTTTGTAGACTGTGCATGTCATCTCGAGGCGAATTACTGCCGATTTTCCCTACCACCAGTTCAGATGACTTGGAACCTCCCATCCTCGTTTCGAGGATAAAGGATTGCGTGGCTGTAAAAATAAACGAAAATGACGATCTACCAACGAACGTCTGCCGAAAGTGCGTGGATAATGTCAACAACTGGCATTTATTCAAGACAGTATGTGCAAAGACACAAATCAAACTACTGTCTCTCCCTAGAAAAGATGGAAGCCTACTAGAAGAGGTGCATATCAAAAGTGAGCCCTGTTTTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGGTCATACAATGATGCTGAGgATGCCAGTTCATCAAGCAAGTTGCAGCCAGAAGGTCCACCGATCCTAGCTTCACTTGGTCTTACACCGAGGAGTGATAAGGGTCTGGAGAGTGAAAAAGACGAGGAAGATGAATTCGAGGAAGAGGTTAAAGTGCCTCAGCTAAGCCAAGCCAAGCCAGTGAAGGTGCCGAATATGCCAGAGGTTTCTATCACCGTGATGCGACCCACCGGCGAAACGCTCCAGTCCCGACAAGGTATCCAGCAAATAGCTTCAAAGGATTGCCTCATCTGTGGAAGATCCTACCGATACTCACATAATGCGAGGCGGCACGAACTTAACACGCACAAGTTCGATCGCTACaccaacaaaataaacaataaaaaaacacactcgCATATGCAACCCAAACTCAGACCGAACCCGTTCAACCCTAAAGCACGACTTATGCCTAACCCCATCAGCCACAAAATGCAGTTTATTCCCAAAATGATGCCCAAACTAAATGCAATTCCTCAAAAAATTATCACTCCGCCTAGACCAATACCTATAAAATCTTCAAAGACACCACAGAACAATTTACCGTATCCGCTACGCATCAAAGCTCTCAAAGATCTGCAGATAAAGAAAAAGGAGCCCCAAATTTTAAAATCACTGCTCACGTCGAAACCGGAAGTTTTAGTATCGGAGCCAGAAATTATGAATTCTGGACCTGAAAGTCCGGAAACGCTTATATCTGAACCTGAAATAGCGTCTTTCCAAGTCGAGGCTATTCTTACGGAGCCCAATGAATACGATGATAATGACGAAGAAGAAGGGGAAGATATGCCCATGAAACAAAACCAAAACTACGACACTGTTGACATGGATTCTGAACATGAAATAGAAATAGCGCGACGACATGAAATAACGGATGATAACGAGGAAAATCTTGATGATCAGCACGACGAAGAAAACCACATCGATGAAACTGACAAAACAGATGAAAATGATGTTGAAAAAGATCTCAGTTCACATGAAACTGATCACGGTAATGAAAACGAAAATATGGACGTGGATGAAAATGGTGAATCCAAAGACGGAGAATATAATGAGGAGGAAGAAGAAAGAAACGAAGAAGGAGAAAATGAAGAGTCAGGGGGTAGTCAGGGACCCGATGGTCATGAAGAAGACAGGGAAGACCCACCCGTCGTGATGCCACAAGTAGAGCTCAATGCAGACTCACTGAATCACTGTAACATATATAGCGAGGCGAATGAGGATGAAGATGATCCCGACGATAGCGCCGACTTCAATGATACTGCCGACGGTGACTCTGCTGACGCTCCCAAGGAACTCGATCCAGACAAGACATATGTCACACTAGCACAAAAAGAATTCATCAAACGATACCGGGACACAATCCTACAAATAAACACTAAACGATGCATTTGCTGTGATAAGGAGTACCCTCGCAGAAAGGCTGTCATACAACATCTCCAGAAAAACGGACACAAAGTCCCAAAACACACTTGCTACAATTGCGTCGTGACCTTCACTCACATTGGAGCTTTGCTCAGCCACATGCGGCAAAATGCTTGCACCGATTTGTGGAAGATCGTCTACGACGAGAACGGTATCACTAGCGATATGATCATTGAAGAACCTAAAAGTAGAATTCAGACCAAAGATATTTTCAATGCAAAATCTTATGCGTGTAGATTATGCCCTGCTAAATTCCAGCTAAAGCAATCGATCATGAAACACGTTTCTGAGTTCCACGAAGATGGCCAGTCTCATGTTCCTAACGCTTGCGTCCACTGCGGCACTTGCTTTAAAGATAGAACGATGCTCAAGAAACATATCCGCAACGGCGATTGTACTGTGTATATCGATTGCGATCTATGTTCGGAACAATTCACCAACATGCAAGACTTTAATGATCACGCATTGTCTGCCCACACTGAGCACTTTGTGAAAACTGAAAACCAGAGCGTCGACGGGCGCCTCACAGACTGCTATATTTGTGGAACTAAGACTAATGGCTATTCAGACCTTCTCAAGCACTTCAAATCCGATCACGATGTAATGCCGCATCACTGCCAGTTTTGCGGTGTTAAGTTTGAGCAACCCGTGGATCTAAACAAACATCTGAACTTAGAACATCCCGGGCAAACTCCGGACATGCAGTCTTCGCAACCAGACATGTCACTTGTCAAAGAGGAAGCTGAGGAATATCATTACTCTTGTACAGAGTGTAATGCTATTTTCGAAACTGTAGATGCGTGGACAGATCACCAAGTAGCAGAGCATAACCAAGTGGCCCACCACTGCGACCAATGTGAAAAGAAATTCTTGCGGCCCTCGGAGCTCGCGGAACACAAGAACACTCACTTACGAGTGAAATTCTACCCTTGTAGCAGCTGTTCTAACTCGTACGGCACTCCTCAAAAATTATCCGAACATGTTCAACAAGTTCATCAAAATGGGGGAAACTCCTCTGCCAATTCAGAAAATGAATTCTTCTGCGACATTTGTATACGAGGGTTCAAAAGCCGTCAGGCTTACTCGAATCATATGCGCATTCATGCCAAAGTGCCAACTACGAATAGAAAGCCGGGTGAGCTTAAGGGATTCGACCCGCGCATCATTGGGAAACCTATCAAGCAATTCACTATGACCAGTGTTGTTCAACCCGGCTTCCTCAATTTCAAACCAAATGCGAATGTTCCTAATGCACCCTATTCGTGTGATATTTGTGGTAAAGGTTTCATGCACAAGAAGAATATTTGGAAAcacaaaaaagttttacatgCTGATATAATAAACGACCGAAATGATAGTGAAGAAAACACGATGCACGCATCCACCGAAGAAGACGAATATAACGTAGATGAAAACGGTGTATTACTATCAACGCCACAATTCAACAGTTTCAATTTTAGCAATTTCGCTAATAACGCAGCCCCACCAGAACCTACGTCTTTTGCTTGCGAAATATGTTCGAAGAGTTTCCCGCTAAAGACTAGTCTGTTCAAGCATAAACGCGCTAAGCATGGCATCACGAATGCAAATCCCGCCGGCTTCGGTGACACTAAGATGCATACCGAAGGCGCAGGCGGTGGTAGATCCAGCTGTAccatctgcaaaatttcatttgcaGACAAAAAGTCTTATTATCGCCACAGAAAGAACTTTCACAAATCAGCTACGCAAATGTGTAAGATATGTGGTAAACCATTAAATTCTACGCAAGAATTGTACGAACATCTGAAAGCGGCTCACGCTAGAGAGTTGCTCGGGTACGATCCTAACGAAAACAAAAGAAAGGCCCAGGAGCAAGAGATCGAGCCTGAAATGGACAACGAACCAGATGCCATCGACCCAAGTGCAGACTACCAGGCGCGCTATCCGTGCGACACCTGTGGCAAACAGTTTGTAGGCCTGCTATCACTACAAAATCACCAGTGCGTAAACCATGCCCCTAATCAACCGCAAACTTTCGATTGTGAAATCTGTAACAAAAGTTACACCTCCATAGCTGCATTGAAGAGTCATCGCGGTTGGCATCTTCGTTCGCCTGATGGCAAGGCGGCCGCTAACAATAGCGGACTTTGGATGCCACAACACAAAGTTACCAACAAGATCAGCAAATACGAAGTCATAGAGACGACAACGCCGTCGCCAACTGTGGTGACTCGGCAACAATCGACTCCCGCGGCTGCTGCTAAAAGAAGGTTACCGCCAGAAGTGGAAGTGACCGTCGTTAATCCGAATAAGAAAATGCGATCGGATGATTCCGAAATTGAGCAGCAAAACGACACCCTCGAAGAGAAGTACTGCACCATATGCGACAAGGAGTTTACAAAACGCGCCGCTTTTCAACGGCACATGGACGAGGTACATCAGCCGAATTCAGTGTTCTGCCCGGTTTGTGATAAAAGCTTTACTCGGAAATCAACGTTGCTCGTGCACATGAAAAAGCATTACGAAGGCGGCGGGGAGGGTAGCTCATCTGCTCAAGTTGACGAGGAGGATGAAGGGTTTTCGTGTGATCTCTGCGGCGCGCAGTACGATACAGAAAATGCGTTGAGAGCGCATCAAATCCGGCATCACGGGGAAGAGTCCGGTGACTCTGAAGACGACGGGGAAGTCTGCGGGCCAGTGGTGACGCAACCGGGCGAGTTCACTTGCGGACAGTGCGGCGATGGCGTTGCCACTGCGCGGGATCTAATCACGCACCGCGCCGTTCATTCGACACCGACCAAATTCCTGTGTAACATTTGCAAAGTGTACTTCGCGAGAGCATTGGACCTATCGTCGCACACTCGCGCCCGACACGCTGACAATGAGAATGTATTCTTTCCGTGCGCTATGTGCGATCGTTTCTACATGAACAAGAAAAGTTTACAGCGACACATCGACATGGCTCACTGA
- Protein Sequence
- MTVNYDRVCRLCMSSRGELLPIFPTTSSDDLEPPILVSRIKDCVAVKINENDDLPTNVCRKCVDNVNNWHLFKTVCAKTQIKLLSLPRKDGSLLEEVHIKSEPCFDEAYDDGVVIDGSYNDAEDASSSSKLQPEGPPILASLGLTPRSDKGLESEKDEEDEFEEEVKVPQLSQAKPVKVPNMPEVSITVMRPTGETLQSRQGIQQIASKDCLICGRSYRYSHNARRHELNTHKFDRYTNKINNKKTHSHMQPKLRPNPFNPKARLMPNPISHKMQFIPKMMPKLNAIPQKIITPPRPIPIKSSKTPQNNLPYPLRIKALKDLQIKKKEPQILKSLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILTEPNEYDDNDEEEGEDMPMKQNQNYDTVDMDSEHEIEIARRHEITDDNEENLDDQHDEENHIDETDKTDENDVEKDLSSHETDHGNENENMDVDENGESKDGEYNEEEEERNEEGENEESGGSQGPDGHEEDREDPPVVMPQVELNADSLNHCNIYSEANEDEDDPDDSADFNDTADGDSADAPKELDPDKTYVTLAQKEFIKRYRDTILQINTKRCICCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRQNACTDLWKIVYDENGITSDMIIEEPKSRIQTKDIFNAKSYACRLCPAKFQLKQSIMKHVSEFHEDGQSHVPNACVHCGTCFKDRTMLKKHIRNGDCTVYIDCDLCSEQFTNMQDFNDHALSAHTEHFVKTENQSVDGRLTDCYICGTKTNGYSDLLKHFKSDHDVMPHHCQFCGVKFEQPVDLNKHLNLEHPGQTPDMQSSQPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSSCSNSYGTPQKLSEHVQQVHQNGGNSSANSENEFFCDICIRGFKSRQAYSNHMRIHAKVPTTNRKPGELKGFDPRIIGKPIKQFTMTSVVQPGFLNFKPNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEEDEYNVDENGVLLSTPQFNSFNFSNFANNAAPPEPTSFACEICSKSFPLKTSLFKHKRAKHGITNANPAGFGDTKMHTEGAGGGRSSCTICKISFADKKSYYRHRKNFHKSATQMCKICGKPLNSTQELYEHLKAAHARELLGYDPNENKRKAQEQEIEPEMDNEPDAIDPSADYQARYPCDTCGKQFVGLLSLQNHQCVNHAPNQPQTFDCEICNKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKISKYEVIETTTPSPTVVTRQQSTPAAAAKRRLPPEVEVTVVNPNKKMRSDDSEIEQQNDTLEEKYCTICDKEFTKRAAFQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGGEGSSSAQVDEEDEGFSCDLCGAQYDTENALRAHQIRHHGEESGDSEDDGEVCGPVVTQPGEFTCGQCGDGVATARDLITHRAVHSTPTKFLCNICKVYFARALDLSSHTRARHADNENVFFPCAMCDRFYMNKKSLQRHIDMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -