Vcam021869.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596063.1:7451893-7471133[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.019 1.5 10.1 0.0 1 23 56 79 56 79 0.92 2 39 2.4 1.9e+02 3.5 1.6 2 23 152 173 151 173 0.95 3 39 0.25 19 6.6 3.1 1 23 282 305 282 305 0.94 4 39 5.9 4.6e+02 2.3 0.2 2 23 332 354 331 354 0.91 5 39 0.7 54 5.2 0.2 1 23 402 425 402 425 0.88 6 39 0.00019 0.015 16.4 1.9 1 23 431 453 431 453 0.98 7 39 0.00063 0.048 14.8 1.6 1 23 459 482 459 482 0.97 8 39 0.00053 0.041 15.0 0.2 2 23 490 512 489 512 0.96 9 39 3.9e-05 0.003 18.6 2.9 1 23 518 540 518 540 0.97 10 39 1e-06 7.7e-05 23.6 0.5 2 23 547 568 546 568 0.97 11 39 0.27 21 6.5 2.0 1 21 574 594 574 599 0.95 12 39 0.064 5 8.4 2.8 1 23 786 809 786 809 0.96 13 39 0.38 29 6.0 0.6 2 23 883 904 882 904 0.96 14 39 0.0042 0.32 12.2 0.1 1 23 908 930 908 930 0.95 15 39 3.3 2.6e+02 3.0 0.2 7 23 930 947 930 947 0.90 16 39 0.18 14 7.1 0.3 2 23 974 996 973 996 0.95 17 39 0.06 4.7 8.5 2.5 1 23 1018 1040 1018 1040 0.98 18 39 0.0014 0.11 13.7 0.5 1 23 1044 1066 1044 1066 0.96 19 39 0.0019 0.15 13.2 0.4 1 23 1071 1094 1071 1094 0.96 20 39 0.036 2.8 9.2 0.2 3 23 1216 1237 1214 1237 0.93 21 39 0.37 29 6.0 0.4 2 23 1264 1286 1263 1286 0.95 22 39 2.6 2e+02 3.4 6.8 1 23 1308 1330 1308 1330 0.98 23 39 0.006 0.46 11.7 0.9 1 23 1334 1356 1334 1356 0.98 24 39 0.00021 0.017 16.2 0.4 1 23 1361 1384 1361 1384 0.97 25 39 3.1 2.4e+02 3.1 2.1 2 23 1391 1413 1390 1413 0.94 26 39 0.0004 0.031 15.4 2.8 2 23 1421 1443 1420 1443 0.95 27 39 0.07 5.4 8.3 0.8 1 20 1534 1553 1534 1554 0.95 28 39 0.012 0.93 10.7 1.0 2 23 1584 1606 1583 1606 0.95 29 39 0.06 4.6 8.5 2.8 2 23 1629 1650 1628 1650 0.98 30 39 0.4 31 5.9 0.0 1 17 1654 1670 1654 1670 0.93 31 39 7.4 5.7e+02 2.0 1.4 1 23 1722 1745 1722 1745 0.91 32 39 0.0071 0.55 11.5 4.9 1 23 1816 1838 1816 1838 0.99 33 39 0.0017 0.13 13.4 0.2 3 23 1844 1864 1842 1864 0.96 34 39 0.00066 0.051 14.7 2.1 1 23 1869 1892 1869 1892 0.98 35 39 0.023 1.8 9.8 1.4 1 23 1898 1921 1898 1921 0.92 36 39 9.6e-05 0.0075 17.3 1.6 2 23 1929 1951 1928 1951 0.96 37 39 0.033 2.5 9.4 3.4 1 23 1957 1979 1957 1979 0.97 38 39 8.6e-06 0.00067 20.6 3.0 1 23 1985 2007 1985 2007 0.99 39 39 0.017 1.3 10.2 5.6 1 23 2013 2036 2013 2036 0.98
Sequence Information
- Coding Sequence
- ATGTTTACGCTTAGAATACACTATTTACAAGAACTCGAAGAAAGACGCAGGAAACCAGAGTTCGATGGTATACCCGAACCAGAACTGCGGCAGCATAGACACAACTTCAGACAAATCTTACAGTTCACGAATGCAACTCCTATAAGGTGCCACACAGACACGGGCTACGCGTGTGCCTACTGCGTCGAAAGTTTCCAAAGTCCCGCAGACCTAAAGGAACACACAATTGAGTCTCATGATGATAGGAAGCATTTGATGAATAAAGTTTCGATTTCGAAGTTTCTTGTCAAACTCGACATAACAAATCTAGAGTGTAATATTTGTGGTGAGCTTATAGATGGATCGGATATGGACGGAATTACAAATCATTTGGAAGGTCACGACAAAGCTATGTACAGCAATATAAGAAACTACATAATACCGTTCAAATTCGATGACGACGGCGCTTTCCTTAAATGCTCGATCTGTTCCGAAGTGCACGGGAATTTCAAAACTCTAAAAATGCACATGAACGATCATTTCGgTATCGTCAACTGTGACGTGAAACCAATTAAAGTGGAAATTGAATGGGATGTAGACAGACATAGTGCGGAAGTTTTTGCTACAAGTATAAAAGAAGAGAAAATGGCTTCGATTGCCAgtgagaaaaagaaaaaaagttcaaaacggacggtaaaaaaaaaaggcgtaGAAAGTGCGAAAGGAAATACATTTGAACCACTCAAAATTAAACCGCCAGCTAAAGCCGAGGTATTGGATGTTGATAAACATCGGTTTAACGTACAAACGATACTACAGCACTCGAATGCTACACCCATCCGAGCGCACTACGCTGGCAATGGGTACGCCTGCTGCTTCTGCAAGCAGTATTTCCGCAAAGCGGCCGAACTAAAAGACCACACTTTACAGACTCACGATGATCaaactaaaagtaaatatatgCAGAAAGCCTTTCTCTTCAAATTGTTTGTCAAACTCGATATCACGTCGCTACGATGCAACCTCTGCTCATACGAAGTACTGAATCTCGATGAGTTGATCCATCATCTGAATGCCGCGCATCAAAAAGGCATACACACTGatattaaaaatcaaataatgtGTTTCAAATTGGACGGGGACGCGTTCAGGTGCTTTATGTGCTCTGTCGAATACCACAGTTTCAAGAACTTGCTGGAGCACGCGCACTCGCATTACAGAAATTTCATTTGCGAAATTTGCGACGCTGGTTTCATAAATCGTTTGAAACTATATGGACACGTATACAATAAACACAAAGGCGAAGGCTCACATAAATGCACCACATGCGAGAAAGTATTTGATACCCCCATTAAGCTTAAAACTCACGAACGGATACATTCCGGATCTGTTCTATACAAATGTCACGAATGTGGCGAGAAATTTCCAAAGAAAAAAGGAAAGCGGGATCACATGATAAGCGCGCACGGAGTAGAATTCGCACAAATCAAATGCTCGGCTTGCGAAAAGACGTTTATCAGCAAAGCTTCGCTGAGCGTTCACATAAACAGAGATCATTTAATGGATAGGCGCCACCGTTGCGATATTTGTGATAAAACGTTTTTCACCTCTTCATTTCTACGAGATCACATGGTGTCTCATTCTAGGGTTCGTGAAATCCAATGTGACGAGTGCCCGAAAACGTTTGCCAGAAAGAAGGCTCTACGCGAGCATATGAAATCTCATACCGGAGATCGTCGATTTAAATGCACATTCTGTGACATGGCATTCTTGCAAAAATGCAGCTTAAAGGGACACTTGCGTGGCGTCAGAGAccataatgaaataaaatcggATGTAGACAATCTTTGGGGAGTAACCATTGTAAAAGTAAAGTGTCTCAAAAATGACGAAAATctcttaaaaaatgataaaacatCACAATCTTATAAACGCCTTTCGAAGAATGTAAATATTGGGCATGTTACTGTTCCAAGTAAAACAACCTCAGTAACTCCGTCCTTGCAAGTCGAGAATGCTgcatcaaaatcaattaaacGCGCTGCAGCCAAACCGAACAAAAAGTTAAATGACACCCTATCTCAAAGAATCAAAATAAATCCTCCACCAGACCTGAGTATAGAGCAAATTAAATCAACCGACTCAAAAGCCAACGAGTCTCCCTCTCCAATTAAACTCTGCTATAAAATAACACCGCCTAGAAAGCAACCAAGCAAAAAGGAATTGCAGAAACCAATTGATGCAGTTCAACGTCTCGTTATAATTCCTCCTCCAGATATGGATTTTATGATGGAACTTGACAAGCACAGGTTCAATATCAAAACCGTTATGCAAAATTCAAACGCCACACCGATAAGAAACCACGTTAAAAGTGGCTTTGTTTGCTGTTTCTGTGACGCACACTTTCCCAAACCAGCTGAACTTAAACTCCACACTAAGCAGACCCACGTTGACGATGAGAGTAAGGACAAGTTCTTTCGAAAAAAGGCAGTCTTATACTCATTTATGGTTAAACTTGATATAACATCTTTGGTGTGCAGCAACTGCGACGACCCGCAAGATACTCTAGAACAGCTTATTCAGCACCTCAACGATGTCCATCAAAAAGGCCTGCACACGGATATCAAAAGTCACATCGTGTGCTTTAAATTCGACAGCGAAGTGATGAGATGCCTCGTGTGCTTGCTGGAGTTCAACAGCTTCAAACTGTTATCTGAACACATGAACCAGCATTACACGAATTTTGTTTGTGACGAATGTGGCGCGGGATTTATCAATCGAAGGCAGCTGCTGCTACATTCTGATAAGCACAAAAGATTCCCCAATGCCGCGGATCTTAAAACTCACACCATCCAAATGCACGACGATGAAACCAAAGACACATTTATGGCTGGCATTAAAATGTTCAGGTTTATGGTAAAACTCGACATAACATCCCTTTGCTGCAACATTTGCAGCATGCCTCTAGATAACCTGGTGCAACTCACCGATCACCTTAACTCGGCCCATAAGAAAGGCCTCTACACAGATATTAAACGTCACATTGCGTCCTTTAAATTAGACGATGAAAAGTTCATGTGTCATATCTGCTCGGTTGAATACCACAGCTTCGGATTATTACTAGTACACATGAACAAACACAATATAAATTTCAAATGCGAAGAATGCGGAGCGGGATACATAAGTCAGTGTCAGCTTATAAAACACTATGGTATTCACAAATTGAGTTCTTACAAATGCGTAGTATGCGATAAAGGATTTCCATCATCGGAAACGATGTTGAGCCACAAGCGTGACACGCACCCATCCAGTAAAACGGATGTGAGTAAGTCAAGAGTAGAATCGACCATCAAAGATAAAAAACTGGCCGTCAAAAAagacgtcaaagtcaaaggcaCGTCTAGTGTTGTGGATAATAAAGCTCCAAAACTAGACAAAAAACACCAGATAAAGGCacgaaattgtaaaaaaaaacaaccaatcCCAGTAAGCGAAAGTATATCGGAATCATCGGATTCGCCAGAACCTATCCCTGTAAGAAAATCAGGCTCTAAACGTGCGCATGAAATATTGGAAATTGAAAAGCATCGTTTCAACGCTCGTACAATAATTAAGTATTCCAATGCGACCCCCATACAATCGCATTTCGTTGATATCGGGTACGGTTGTAGTTTCTGCAAAGAGGCTTTCCCCAAAGCCGCGGATCTTAAAACTCACACCATCCAAATGCACGACGATGACATAAAAGACACATTTTTGTCTGGCATGAAAATGTTTAGGTTTATGGTTAAACTTGACATAACATCCCTTTGTTGCAACATTTGCAGCTTGAATCTAGATGACCTGGTGCAACTCACCGATCACCTTAACTCGGTCCATAAGAAAGGGCTCTACACAGATATTAAATGTCACATCGCGTCCTTTAAACTAGACGATGAAAAGTTCGAGTGTCACGTTTGCTCGGTTGAATGCAACAACTTCAGAGTATTACTAAAACATATGTGCAAACACAACATGAATTTCACATGTGAAAAATGCGGAGCGGGATACATCAATCTGTGTCAGCTCAAAATACACTATGGTACTCACAAATTGGGTTCTTACGAATGCGGAGTATGCGATAAAGTATTTGCATCGTCGAGAAAGATGTTGAACCACAAGCGTGTCACGCATTCTGGAAGCGGAGCCACCACGTGTCGACAATGCGGTGTTAAATTCCAATCTACCAGATCGAGGAATACTCACTTGACTAAGGTCCACGGACTTGTTTTTAACGTGTGTAAATGTGAAGAGTGCGGTTTAACTTTTAAGAATTCTGATCGTTTGAGAATACACAAGCAAAGAGATCATCTGTTGGAGAACCGAGGccccaaaaacattaaaaaggaATTAGAAGTCTCTTGGGAGGTCACTATAGTTAAAGTAAAAGATACAAACGTGGATAAGTCTAACAAAAATGTCAGAACTCAATCTATAAAGTCCGAAGAAGCCAATCAAAGAGGAAAAGTTAAACAGTCTGATGCGGAAGCTTCAGAACTCGATAAACATCGATACAACGTACGGACGGTATTACGATACTCGAACGCGACACCGATCAGAACGCACACCATCGCCAGCGGATACGTCTGCTGCTTCTGCAAGGCACATTTCCCTAGAGCAGCTGCCCTCAAAGCGCACACTCTTTGCGACCATGACAACGATACCAAACACAAATTCATGCAGGGAACTACTCTGTTCTCATTAATTGTGAAACTAGATATAACTTCACTGACCTGCAACATTTGCAACTCGAGTGTGAGTGATCTAGACCAACTATTTCACCATCTCAATAATTCCCATCAGAAAGGAGTCCATACCGATATTAAAAGCTACATAGCCTGCTTTAAACTTGACAACGAACAAATGAAGTGCCACATTTGTACCGCTGAATACAAAAGCTTCAAGTTTCTCTTGGAGCATATGAACAAGCATTCCACCAACTTCGTTTGCGACGAGTGCGGGGCTGGCTTTATAAATCTAGGCCAGTTGAGATTTCAAAAACGACCGGCTgttgcattaaaaataaaacctccGCCAAAACTTTCGTACGAGATAGCAGAGATCGACAAGCAGCGCTACAACATCCGAACGATACTCCAACATTCCAACGCAAGTCCGATCCGAGCGCACGATGTCGGAGGCGGCTACCTTTGCTGTTTCTGCGAAGAGCGATTCCTCAAAGCCGCCGATCTCAAGACGCACACCATACAAGAGCACGACGATACAACTAAAAACAAGTTCATGCGGGGGCAGTTTATGTTTTCTTATATTGTTAAACTCGACATAACATCCTTAAGCTGCAGTGTTTGTTGTAAGCCTGCAGATGATCTAGAGCTGCTCATCAGCCACCTGAACGAAACCCACCAGAAAGAACTTTACAGGGACATCAAAAATCACATCGCCTGTTTTAAGCTCGACGGGGAATCGTTCAAGTGTCACATCTGCTCTGTAGAATACAACAGTTTCAAATTTTTGCAAAAGCATATGAATAAGCATTTTACGAATGTTATATGCGCCGAGTGCGGAGCGGGGTTCGTTAATCGGCATCAGCTTAAAGCGCATTCCAATTCTCACAAATCGGGCTCGCACAAATGCAGGACGTGCGATAAAGTATTTCCATCTTCGCCAAAGATGAGGAACCACGAACGTACTGTACATTCATCCAAGTTTGTGTACAAATGCCCTCAATGCagtgaaaaattcaaatctaTACGAAGTAAAAAGGTACACATGGTTGAATTTCACAGTTTCGTGTTTCCTGATTTAAAATGCGACACGTGCGAGAgaacatttcaaaacaaagaTAATTTGAGAATACATCGGCAGAGAGATCATCTGATGGAGAGACGATTTATGTGTGATACTTGTAACTGTAGATTTTTTACTGCAGTCATGCTGAAAAACCATAGCCTTACCCACACGGGGCTGCGCGCTTTCAAATGCGACATATGCTCCAAATCGTACGCAAGAAAGTGTGCGCTAAGAGAGCACATGCGTTCACATGCCGGCGATCGCCGTTTCAAGTGCACCTACTGCAACATGACTTTCTTGCAAAAGTGTAGCCTGAAGGGACACCTCCGTACCCGGCATAATGCGACTCTCGAAGAGTAG
- Protein Sequence
- MFTLRIHYLQELEERRRKPEFDGIPEPELRQHRHNFRQILQFTNATPIRCHTDTGYACAYCVESFQSPADLKEHTIESHDDRKHLMNKVSISKFLVKLDITNLECNICGELIDGSDMDGITNHLEGHDKAMYSNIRNYIIPFKFDDDGAFLKCSICSEVHGNFKTLKMHMNDHFGIVNCDVKPIKVEIEWDVDRHSAEVFATSIKEEKMASIASEKKKKSSKRTVKKKGVESAKGNTFEPLKIKPPAKAEVLDVDKHRFNVQTILQHSNATPIRAHYAGNGYACCFCKQYFRKAAELKDHTLQTHDDQTKSKYMQKAFLFKLFVKLDITSLRCNLCSYEVLNLDELIHHLNAAHQKGIHTDIKNQIMCFKLDGDAFRCFMCSVEYHSFKNLLEHAHSHYRNFICEICDAGFINRLKLYGHVYNKHKGEGSHKCTTCEKVFDTPIKLKTHERIHSGSVLYKCHECGEKFPKKKGKRDHMISAHGVEFAQIKCSACEKTFISKASLSVHINRDHLMDRRHRCDICDKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTFCDMAFLQKCSLKGHLRGVRDHNEIKSDVDNLWGVTIVKVKCLKNDENLLKNDKTSQSYKRLSKNVNIGHVTVPSKTTSVTPSLQVENAASKSIKRAAAKPNKKLNDTLSQRIKINPPPDLSIEQIKSTDSKANESPSPIKLCYKITPPRKQPSKKELQKPIDAVQRLVIIPPPDMDFMMELDKHRFNIKTVMQNSNATPIRNHVKSGFVCCFCDAHFPKPAELKLHTKQTHVDDESKDKFFRKKAVLYSFMVKLDITSLVCSNCDDPQDTLEQLIQHLNDVHQKGLHTDIKSHIVCFKFDSEVMRCLVCLLEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKRFPNAADLKTHTIQMHDDETKDTFMAGIKMFRFMVKLDITSLCCNICSMPLDNLVQLTDHLNSAHKKGLYTDIKRHIASFKLDDEKFMCHICSVEYHSFGLLLVHMNKHNINFKCEECGAGYISQCQLIKHYGIHKLSSYKCVVCDKGFPSSETMLSHKRDTHPSSKTDVSKSRVESTIKDKKLAVKKDVKVKGTSSVVDNKAPKLDKKHQIKARNCKKKQPIPVSESISESSDSPEPIPVRKSGSKRAHEILEIEKHRFNARTIIKYSNATPIQSHFVDIGYGCSFCKEAFPKAADLKTHTIQMHDDDIKDTFLSGMKMFRFMVKLDITSLCCNICSLNLDDLVQLTDHLNSVHKKGLYTDIKCHIASFKLDDEKFECHVCSVECNNFRVLLKHMCKHNMNFTCEKCGAGYINLCQLKIHYGTHKLGSYECGVCDKVFASSRKMLNHKRVTHSGSGATTCRQCGVKFQSTRSRNTHLTKVHGLVFNVCKCEECGLTFKNSDRLRIHKQRDHLLENRGPKNIKKELEVSWEVTIVKVKDTNVDKSNKNVRTQSIKSEEANQRGKVKQSDAEASELDKHRYNVRTVLRYSNATPIRTHTIASGYVCCFCKAHFPRAAALKAHTLCDHDNDTKHKFMQGTTLFSLIVKLDITSLTCNICNSSVSDLDQLFHHLNNSHQKGVHTDIKSYIACFKLDNEQMKCHICTAEYKSFKFLLEHMNKHSTNFVCDECGAGFINLGQLRFQKRPAVALKIKPPPKLSYEIAEIDKQRYNIRTILQHSNASPIRAHDVGGGYLCCFCEERFLKAADLKTHTIQEHDDTTKNKFMRGQFMFSYIVKLDITSLSCSVCCKPADDLELLISHLNETHQKELYRDIKNHIACFKLDGESFKCHICSVEYNSFKFLQKHMNKHFTNVICAECGAGFVNRHQLKAHSNSHKSGSHKCRTCDKVFPSSPKMRNHERTVHSSKFVYKCPQCSEKFKSIRSKKVHMVEFHSFVFPDLKCDTCERTFQNKDNLRIHRQRDHLMERRFMCDTCNCRFFTAVMLKNHSLTHTGLRAFKCDICSKSYARKCALREHMRSHAGDRRFKCTYCNMTFLQKCSLKGHLRTRHNATLEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -