Vcam004877.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- ref(2)P
- Assembly
- GCA_951394065.1
- Location
- OX596038.1:6448650-6463425[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1 81 4.6 3.1 1 23 379 401 379 401 0.94 2 16 1.4e-05 0.0011 20.0 0.3 1 23 407 430 407 430 0.94 3 16 0.33 25 6.2 0.2 3 23 439 459 438 459 0.95 4 16 0.00039 0.03 15.4 1.3 1 23 466 488 466 488 0.97 5 16 1.6e-05 0.0013 19.8 1.4 1 23 496 518 496 518 0.96 6 16 2.1e-07 1.6e-05 25.7 2.6 1 23 524 546 524 546 0.98 7 16 0.0029 0.22 12.7 2.1 1 23 552 574 552 574 0.93 8 16 7.1e-06 0.00055 20.9 3.3 1 23 580 602 580 602 0.99 9 16 5.4e-05 0.0042 18.1 1.7 1 23 608 630 608 630 0.97 10 16 2e-06 0.00016 22.6 0.2 1 23 636 658 636 658 0.98 11 16 2.1e-06 0.00016 22.6 6.6 1 23 664 686 664 686 0.98 12 16 1.5e-07 1.1e-05 26.2 0.3 1 23 692 714 692 714 0.98 13 16 3.1e-05 0.0024 18.9 3.3 1 23 720 742 720 742 0.98 14 16 2.2e-06 0.00017 22.5 0.5 1 23 748 771 748 771 0.96 15 16 6.7e-06 0.00052 21.0 0.6 1 23 777 799 777 799 0.98 16 16 0.0032 0.24 12.6 4.2 1 23 805 827 805 827 0.98
Sequence Information
- Coding Sequence
- ATGGTGAATTATTGCTGTGTATACGGATGCGGACGAAATAGCAGAACCAGTAAACACTTGTACTTTTACAGCGTTCCGAAAGATTTGGATCGACAGGAGCAATGGCTGAAAGCGGCACGGAGAGAGGATTTACTAGAAAAACCACAAGATAAGAGGAACTTATACAGATTTTGTTCCCGGCACTTTTCTCCGCAAAACATCAAGAATAAACATCTTTGCGCCGATGCGGTGCCTACCATGCACTTGCCTGGATGTGAGGTTGAAGagcAATCAGATGATGAGGAACAGCCAATGCATAGTGACATAGCATGCAACAATTGTTGTGCACAGATTGTTGGGTTTCGGTATAAGTGTGTGTCTTGTGTCGACTTTGACCTCTGCTCAAGATGTGAGATGGCTGAAGCACATGAAGAGCATTTGATGCTAAGAATACCATCTCCTCTCAAGTTTAAACAAGttgaaaacataattaaaaaatggCAACTTTATCACCATGAAGAAAACACCGACAACTGCATGAACTTTTccagtgatgatgatgtacctATTCAGAAATATGCCAAAAACTATGATAGTGGTATTGACCTATCtgatgaaataaaacaaactatCCGCTCAGAGGTAGTGAGGGTCATGAAGATCGAAAGCACAGATTTCATCTCAAAAAAAGCAAAACCAACCCAAGTTAAGAAAAGAACTTCCGAAGTTGAAAAGACATCTAAGCGACAAAAGATGAAAATTGATATTCCATCCACAAGCACCCAAGAAGTGGTTTTTGCTGATGTTAATGAAATTCATAGTGTGGACAATGGGAATCACATGGTGGATATTAAAACTgaagTTCAGTACACTTCCTCCTACGAACCTTGTGGTACTGTGAAGGAAGAGCATTCAGATGCAGATGATTCACACTTTGATGAAAGTCCAGATAATGATGTCAAGAAAGAAGGCAATGAATTAACCCCATCTCAAAGCCACAGGGATAAAGATGGCGAAATTGCCACTATCGGAGCTAATCTGAGTGATTTCAAAACAGAGAGTGATAAAATATCTCTGAAAAACGATGAAAGCATTGATGAGCCAAAATTTTCATACAACACCGAGATTGATAGCCTAACAAAACAGGCATTAGATTATTTCTGCCGAATTTGCAACAAGAAACATCTCACGAACAAGGCTTTAAATCAGCACATAAAGGTACATGATACGAGTCGAATGTTTGTGTGCGAAATTTGTGAATACCGCTTCATCACCAAAGCCAATTTAAAAACGCACATTGACAATTTACATAGAACAGAAAGCGCGATAGTCGCTTGCAATGTCTGTCAAAAGCTCATGAACAGCCCAGCAATATTAAAAAGGCACatgaaaatacacacacaaaagcCAAAAACTCACGAGTGTGGTAAGTGCGAGTTGAAGTTTGGTGACAAGAGCACCTTAATCCGTCACAAAGCTACGCACATAGACAATGTTGCGAAACAACATGCTTGCCCGGTATGCAACAAAACTTTTTCAGTAATCTACTATCTCAAGAGCCACATGAAACTTCACACGGGCGACAAACCTTTCTCGTGTGAACGTTGCGGAAAAGCGTTCACACTGAACAGCCATTTGAAGATACATATGAGAACGCACACAGGCGAAAAGCCGTACGCATGCATAAAATGCGACAAGAGGTACTCCAGTCTCGCTCACGTGAACTATCACATGAAAACGCACACAGGAGAAAAGGGGTACACTTGTGAAGTATGCCACAAAGCGTTTTCCGAGAGCAGTCATTGGAAAAGTCACCTGAGAATTCACACGGGCGAGAAACCGTTCGCGTGCGACATGTGCGATAAAACGTTCATAGGACACACCAACTTGAAACTACACAAAAGGATACACACGGGGGTAAAGCCGCACGTTTGCGAAGTTTGCGGAAAGGCGTTCGCACAAAAGTCAGTGTTGATTATACATGTGAGGACGCACACTGGTGAGAAGCCATTCGCGTGCCACAGGTGCGGCAAAACGTTCACCATGTCGACGCATCTGAGAACCCACATGCGGACTCACACGGGGGAGAAACCGTACGCGTGCGAGATCTGCGGCAAAACGTTCGCGGAAAATGCGCGTCTGAAACGGCACATGCGAACACACACGGGAGAAAAGCCGTACTCCTGCACGATGTGTCATAAATCCTTCGCAGACTACACAAACATGAAGACTCATTTGATAACGCACACAGGACAGAAACCCTTTGCATGCGACCGATGTGGGAAAACTTTTACCCAACAAGGCACAATGAAGAAGCACATACAAATAGTTCACTTAAAAGAGCGACCGTACGCTTGCGATATGTGTCCTAAGACATACGCTAAAAGCCAAACGTTGAAGGATCATATGCGATCGCACACAGGCGAGCGGCCATACGCCTGTGATACGTGTAGTAAAACATTTACGAGGTGCGAAATTATGAAACGGCATTTAAAAACTCATGCGGGAGAAGGTCGGTGCGATGTGAAATTTGATAAAACTTTGTCTGCTGGCGTAGCGATGGTTGGTGATCAGTCTTCATGA
- Protein Sequence
- MVNYCCVYGCGRNSRTSKHLYFYSVPKDLDRQEQWLKAARREDLLEKPQDKRNLYRFCSRHFSPQNIKNKHLCADAVPTMHLPGCEVEEQSDDEEQPMHSDIACNNCCAQIVGFRYKCVSCVDFDLCSRCEMAEAHEEHLMLRIPSPLKFKQVENIIKKWQLYHHEENTDNCMNFSSDDDVPIQKYAKNYDSGIDLSDEIKQTIRSEVVRVMKIESTDFISKKAKPTQVKKRTSEVEKTSKRQKMKIDIPSTSTQEVVFADVNEIHSVDNGNHMVDIKTEVQYTSSYEPCGTVKEEHSDADDSHFDESPDNDVKKEGNELTPSQSHRDKDGEIATIGANLSDFKTESDKISLKNDESIDEPKFSYNTEIDSLTKQALDYFCRICNKKHLTNKALNQHIKVHDTSRMFVCEICEYRFITKANLKTHIDNLHRTESAIVACNVCQKLMNSPAILKRHMKIHTQKPKTHECGKCELKFGDKSTLIRHKATHIDNVAKQHACPVCNKTFSVIYYLKSHMKLHTGDKPFSCERCGKAFTLNSHLKIHMRTHTGEKPYACIKCDKRYSSLAHVNYHMKTHTGEKGYTCEVCHKAFSESSHWKSHLRIHTGEKPFACDMCDKTFIGHTNLKLHKRIHTGVKPHVCEVCGKAFAQKSVLIIHVRTHTGEKPFACHRCGKTFTMSTHLRTHMRTHTGEKPYACEICGKTFAENARLKRHMRTHTGEKPYSCTMCHKSFADYTNMKTHLITHTGQKPFACDRCGKTFTQQGTMKKHIQIVHLKERPYACDMCPKTYAKSQTLKDHMRSHTGERPYACDTCSKTFTRCEIMKRHLKTHAGEGRCDVKFDKTLSAGVAMVGDQSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509673;
- 90% Identity
- iTF_01509673;
- 80% Identity
- iTF_01509673;