Vcam023842.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:8928773-8938932[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1e-06 8.6e-05 23.4 1.6 1 23 165 187 165 187 0.99 2 15 7.7e-06 0.0006 20.8 0.9 3 23 205 225 204 225 0.98 3 15 5.6e-05 0.0044 18.1 0.1 1 23 231 253 231 253 0.97 4 15 7.4e-05 0.0057 17.7 0.0 1 23 258 280 258 280 0.96 5 15 4.6e-07 3.5e-05 24.6 0.5 1 23 288 310 288 310 0.98 6 15 3e-07 2.3e-05 25.2 2.3 1 23 316 338 316 338 0.98 7 15 0.07 5.4 8.3 4.1 1 23 344 366 344 366 0.95 8 15 4.1e-06 0.00031 21.7 0.4 1 23 372 394 372 394 0.97 9 15 1.2e-05 0.00092 20.2 2.4 1 23 399 421 399 421 0.98 10 15 1.9e-05 0.0015 19.5 2.1 1 23 426 448 426 448 0.98 11 15 7.7e-06 0.0006 20.8 0.4 1 23 454 476 454 476 0.98 12 15 1.1e-07 8.2e-06 26.6 2.2 1 23 482 504 482 504 0.98 13 15 4.5e-06 0.00035 21.5 6.1 2 23 511 532 510 532 0.96 14 15 0.00058 0.045 14.9 0.3 3 23 540 561 538 561 0.96 15 15 2.5e-05 0.002 19.2 1.1 2 23 576 597 575 597 0.97
Sequence Information
- Coding Sequence
- ATGTCGACTCCAGTCTGTAGAGTGTGTTTGTGCGGCGACGTGAGAATGAACTCCATTCAAAATATACACCTACAGGTTGTATTTGAGAGTCTCACCAATATCAAGCCGGACCTCGAGGGAGCTCTAGAGAATGTGTGCGGGATGTGTCGCGGGCGGCTGCACAGATGTCTCTCGCTGGCCGCCGAGGCGCGACGCTCGGCCGCCGTGCTCTCCGACCTGTACCTCAGGGGCATTGAGGCTACACAAGAATCGCTGTCCTCGCTAGGAATCAAACCAACGCCGTACCTCTCGTTCAGCGAAGTGAAGTTCACATCGACAGACGGAGACGACGCCAGCGTTCAGAGCGACGAGGGGATCGTGAAGGTAGAGCTGAGGGAGCTCAAAGAGGAGCGGAGTGACTCCCCGGAGTACGGCGCGGAGGAGATCGACATCAAGCCGCTCCCAGTCTCCGAGCGGGCGCGGAGAGGGAGGAGGCGCGCCGCCTCGGAGCGCTACTCCTGCAACAGATGCGACCGAACCTTCCCCGACAAGACAACCCTCCGCCAGCACATACAAACGCACAGCTCCACGAAGCACGAGCAGCGGGACGACGGCGTGTCGCGCGACAACGCGTGCGACATCTGCAACAAGACGCTCAACACGCCGCAGTCGCTGCAGCGACATCGCCGGACGCACTCCGGTGTGCGACCGTTCGTGTGCGACGTGTGCGCGAAAAAGTTCACAGAAAAAGGCAGCCTCGTGAAGCACATGGGCATCCACTCCGGGGAGCGGTTCGCGTGCGACGCCTGCGGGAAGGACTTCGCGAGGAAGGCGGCGCTCGCGGCCCACGTGCGGCTGCACTCGGGCGCCGCCGCCCCCGTGTACCCGTGCCCCGACTGCGACAAGACATTCAACCTGAAGTACAGTCTGCAGCTGCACCTGCGCCTCCACTCGGGGGAGAGGCCGTTCTCGTGCGACAAGTGCGACAAGTCGTTCTACCGGAACAGCAAGCTGCTGGTGCACCTGCGGACGCACGAGGCCGTGAAGCGCCACGCGTGTCTCCAGTGCGACAAGTCCTTCCACCTGGCGCACGGGCTGCGCGAACACAGCAAGATCCACACCTCGCTGCGGCCGTACGCGTGCGACGAGTGCGACAAGACCTTCTCGCTCCCCAACTACCTGAAGAAGCACGCGCTGACGCACTCGCGCAGCGCGTTTCCGTGTCCGCACTGCGAGAGGACGTACTCCGTGAGGAGCTACCTGCGGAACCACCTGAAGAACCACGCCGGGGAGACGCACACGTGCGACCGATGCGCGAAGAGCTTCACCAACGGCGACAGTCTCAAGTCGCACATGCGGATCCACTCGGGGGAAAAGCGGTTCCCGTGCGAGCTGTGCGAGAAGGCGTTCTCCCGGAGGTTCCAGCTGAAGGAGCACGGGCGGGTTCACTCCGGGGAGAAGCCGTACGCGTGCGCGGAGTGCGGGAAGTGTTTCACGCAGAGCAGCAGTCTGCGGACGCATCGGCGGGTCCACTCCGGCGAGCGGCCCTGCGTGTGTCACCTCTGCGGAAAGTCGTTCACCGACAAGTACTCACTGGCACATCACACGCGCGTACATAGCGGGGAGAAGCCGTACGGATGTCTGCAGTGCGGGCAGTCGTTCATATCGTCGAGTCGTCTGTCGGAGCACGTGCGTCGCGTGCACGCGGGGGGGGAGGGGGGAGGGGGAGGTGGGGGGGAGAACACCTCCTGCGACCGATGCTACAAGACGTTCGGGGGGAAGGCCAACCTCCGGAGACACATGAAGATACACGCGAGGGACGCGCGTCTGGTGATGCCCACTCCTTGA
- Protein Sequence
- MSTPVCRVCLCGDVRMNSIQNIHLQVVFESLTNIKPDLEGALENVCGMCRGRLHRCLSLAAEARRSAAVLSDLYLRGIEATQESLSSLGIKPTPYLSFSEVKFTSTDGDDASVQSDEGIVKVELRELKEERSDSPEYGAEEIDIKPLPVSERARRGRRRAASERYSCNRCDRTFPDKTTLRQHIQTHSSTKHEQRDDGVSRDNACDICNKTLNTPQSLQRHRRTHSGVRPFVCDVCAKKFTEKGSLVKHMGIHSGERFACDACGKDFARKAALAAHVRLHSGAAAPVYPCPDCDKTFNLKYSLQLHLRLHSGERPFSCDKCDKSFYRNSKLLVHLRTHEAVKRHACLQCDKSFHLAHGLREHSKIHTSLRPYACDECDKTFSLPNYLKKHALTHSRSAFPCPHCERTYSVRSYLRNHLKNHAGETHTCDRCAKSFTNGDSLKSHMRIHSGEKRFPCELCEKAFSRRFQLKEHGRVHSGEKPYACAECGKCFTQSSSLRTHRRVHSGERPCVCHLCGKSFTDKYSLAHHTRVHSGEKPYGCLQCGQSFISSSRLSEHVRRVHAGGEGGGGGGGENTSCDRCYKTFGGKANLRRHMKIHARDARLVMPTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -