Vcam023273.2
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:2648405-2652002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.041 3.2 9.1 3.0 1 20 182 201 182 203 0.94 2 20 4.2e-05 0.0032 18.5 3.3 1 23 215 238 215 238 0.96 3 20 0.00035 0.027 15.6 0.7 1 20 271 290 271 294 0.89 4 20 1.3e-05 0.001 20.0 0.5 1 23 300 322 300 322 0.92 5 20 6.3e-07 4.9e-05 24.2 0.5 1 23 329 351 329 351 0.97 6 20 5.9e-06 0.00046 21.1 2.0 1 23 356 378 356 378 0.98 7 20 0.00021 0.017 16.2 5.8 1 23 385 407 385 407 0.98 8 20 7.7e-09 5.9e-07 30.2 2.3 1 23 421 443 421 443 0.98 9 20 0.004 0.31 12.2 1.9 1 23 450 472 450 473 0.95 10 20 1.7e-05 0.0013 19.7 1.3 1 23 479 502 479 502 0.97 11 20 0.02 1.5 10.1 5.6 1 23 509 531 509 531 0.97 12 20 0.0016 0.12 13.5 2.4 1 23 553 575 553 575 0.98 13 20 5e-06 0.00039 21.4 0.6 3 23 583 603 581 603 0.97 14 20 8.7e-07 6.8e-05 23.8 3.6 1 23 609 631 609 631 0.99 15 20 0.35 27 6.1 0.2 3 23 639 660 638 660 0.88 16 20 0.00019 0.014 16.4 0.6 1 23 685 707 685 707 0.98 17 20 1.2e-06 9.3e-05 23.3 0.3 1 23 713 736 713 736 0.97 18 20 3.2e-06 0.00025 22.0 0.2 1 23 742 765 742 765 0.96 19 20 3.8e-07 2.9e-05 24.9 5.9 1 23 771 793 771 793 0.99 20 20 0.0002 0.015 16.3 2.3 1 23 799 822 799 822 0.97
Sequence Information
- Coding Sequence
- ATGCACCGCATTGCAGCTACAGAATTTCTTCTGTATGAAAAACTTGCAAGTATCAAGTTGCTCACAGATAATGAACTGCTGAACAATATGTGTTATACATGCCACACCCAGCTTCAGCGATGCTGCCGGTTCTCAGAACGGGCTCATCGGTCAGAGAAAATTCTGATGGAccttgtacataataatattgagGTAACTCCTGAAGCCATAACCAAGTTAAACCTTGGCATAACTGTAAAAGATCTATCAGAAAATCCAATTGAACCCCTGACAATAAAGCAAGAATCAAACCAAACAGCTCAAGGTATACTTAACCAGGAAATTTACTTCAACGAAAATAGTTCATTTGATGATATCAAAGAAAAGAATATATTGGATTTCGAATCAGAAATAAAAGATGATGATCACATAGAAAACGTGACCGCAGAAGTGAAATACATTAATTTAGATGATGACAATGATGCAGATTTAGGTGACATTCTAGACACAAAAGAAAATGATGTTAAAAACGACTCGGTGAGCACTTTCAATGTAGttgagttttatacttgcttcCGATGCAACAGCAAGTTCAAATCCAAATCAAAACTTGACAAACATGTTACTAAAGAAAGCTGCGTTGACCCTTGCATGGAAGAAACCTATACCTGTAATTATTGCCAAAAGAAATTCAACAATAAAGTCGATTTACACTCACATATCGTTAAACTACACGCAGATGAACCTGTTAAATACGCTTGTAAAACCTGTAGCAAAAAATGTCTAAATAACTGCCAAGCTAAATACCACCTGGTGACTGGAAAGAAAAAGTTTTCGTGTAGGATCTGTAatgtaacatttaaaaataactctgcGTTGCAAGACCATTTTGTGCAACTGCATCCTGGCAAAAAGAGATATGCTTGCATCAACTGTGACAAAAGGTTTAGTAGGAAGACTAATTTAGTAGACCATATAAGAGTTCATACGGGAGAGGAGAAACCATTTGCGTGCGAGTATTGTGATAAACGTTTTATTCGGAAAGGCACGTTGGAAATACACCTGAGAAGCCACACCGAGAAAAGCTTCACATGCCATAATTGTGACCGATCGTTTGCTCAAAAAGTACGCTTGCAGCAACATATGATCGTCCACGCGGAAGAAAAGCCGGAGTACCATTGCGTCTACTGCGAAAAAAAGTTCATGAGGAAAGGACACATGGAGAAGCACATCAGGTCTCACGAGGAGAAGTCATCGGATAACGAGGAAGAATGCAAACAGTTTACCTGCAAAATTTGCAACAAAACATTCACTCGCAAGACTAACCTGAAAGCACATATACGTATCCACACCGGGGAAAATAAACCGTATGCGTGCGAGTTCTGTGATAAGAAATTCTTTGGGAAAGGTCCGTTAAGCAGACATACAATCCGACACCACTCGGGTGATAAGCCGTATTCATGCGACCAATGTGATAAAAAATACTCTCAAAAAGAGCAACTAGCCCAACATAAAATGAAAATCCATATAGAGGAACGTCCGCGATTCAACTGCGATTTTTGTGATAAGAAGTTCAAACTGCACGCCCGGCTGGAACACCACTTAAAGCTGCACAAAAACATGAAACTCCTCGATACCGATCAGAATGATGCCAAAATAAAGTTCGAACAGAAACCCTACGCTTGCAATAAATGTAACCTGCGATTCAAGTTGTACCGCAATTTCGTTACGCATATAAAGTCGCATAGAGAAGAGAAACCGTACGGCTGTAACAGCTGCGGGAAACGGTTCACTAGGAAATACAACCTGCCAGCGCATATGAGGATCCACACCGGCGAAAAGCCATATTCCTGCAATAACTGCAACAAACACTTCATACAGAAAAGCGGTTTAAGAGTCCACATGAAGACTCATAACGACGACAAACCCAACGCTTGTGCTATCTGCAATATCCTGTTCTCGGAGCACAGTGAATTGGCGCAGCACAGCATCGAAACCCACAACATACCTTTAGTCAAAGCGGAGAAAAACTTCCGGCACAAAATGCGAGAAAAGTCTCTCGACGACAAGCCATTTTACTGCGACAAATGCCCAGGACGATTCAAAATGTTGGGCTCGCTGCGTGTTCATTTGCGAACGCACACGGGCGAGCTTCCGTACAGCTGTGATATCTGCGGCAAGAGATTTAACCAAACGGGCAGTTTGAAGGAACACATCATGAGAATCCACAAGAAAATCAAACCATTCGCGTGTGATAACTGTGGCAAGAACTTCGTCACGAAAAACGATCTGCGGATTCACGTGAGAATCGTTCATTTCGGTGAGAAACCGTATGTGTGTAATATTTGTGGGAAGAGGTGTTGTATGCGCAGTAACTTGCAAAGGCATATGAGGACGCATACAGGCGAAAAACCTTTTGCGTGTAACGAATGTGATAAGAAATACAGTGCAAATTGTGAACTGGCGAGGCATAAGCGCACGTCACACGCGGTCGCTCATATTTAA
- Protein Sequence
- MHRIAATEFLLYEKLASIKLLTDNELLNNMCYTCHTQLQRCCRFSERAHRSEKILMDLVHNNIEVTPEAITKLNLGITVKDLSENPIEPLTIKQESNQTAQGILNQEIYFNENSSFDDIKEKNILDFESEIKDDDHIENVTAEVKYINLDDDNDADLGDILDTKENDVKNDSVSTFNVVEFYTCFRCNSKFKSKSKLDKHVTKESCVDPCMEETYTCNYCQKKFNNKVDLHSHIVKLHADEPVKYACKTCSKKCLNNCQAKYHLVTGKKKFSCRICNVTFKNNSALQDHFVQLHPGKKRYACINCDKRFSRKTNLVDHIRVHTGEEKPFACEYCDKRFIRKGTLEIHLRSHTEKSFTCHNCDRSFAQKVRLQQHMIVHAEEKPEYHCVYCEKKFMRKGHMEKHIRSHEEKSSDNEEECKQFTCKICNKTFTRKTNLKAHIRIHTGENKPYACEFCDKKFFGKGPLSRHTIRHHSGDKPYSCDQCDKKYSQKEQLAQHKMKIHIEERPRFNCDFCDKKFKLHARLEHHLKLHKNMKLLDTDQNDAKIKFEQKPYACNKCNLRFKLYRNFVTHIKSHREEKPYGCNSCGKRFTRKYNLPAHMRIHTGEKPYSCNNCNKHFIQKSGLRVHMKTHNDDKPNACAICNILFSEHSELAQHSIETHNIPLVKAEKNFRHKMREKSLDDKPFYCDKCPGRFKMLGSLRVHLRTHTGELPYSCDICGKRFNQTGSLKEHIMRIHKKIKPFACDNCGKNFVTKNDLRIHVRIVHFGEKPYVCNICGKRCCMRSNLQRHMRTHTGEKPFACNECDKKYSANCELARHKRTSHAVAHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -