Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596066.1:2300314-2303930[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.001 0.08 14.1 2.5 2 23 169 191 168 191 0.94

2 25 0.00014 0.011 16.8 5.5 1 23 195 217 195 217 0.98

3 25 2.4e-05 0.0019 19.2 1.1 1 23 242 265 242 265 0.95

4 25 4.4e-05 0.0034 18.4 2.8 1 23 271 294 271 294 0.97

5 25 3.5e-05 0.0027 18.7 0.5 2 23 301 322 300 322 0.97

6 25 0.00071 0.055 14.6 0.4 1 23 339 362 339 362 0.94

7 25 5.7e-05 0.0044 18.0 0.5 1 23 368 391 368 391 0.97

8 25 2.8 2.2e+02 3.3 1.8 3 23 399 419 397 419 0.91

9 25 0.53 41 5.6 4.5 1 23 435 458 432 458 0.89

10 25 3.1e-06 0.00024 22.0 4.1 1 23 464 487 464 487 0.96

11 25 0.00094 0.072 14.2 0.1 1 23 493 515 493 515 0.97

12 25 0.00042 0.033 15.3 2.2 1 23 521 543 521 543 0.99

13 25 3.9e-05 0.003 18.6 2.2 1 23 561 584 561 584 0.95

14 25 6.6e-09 5.1e-07 30.4 0.6 1 23 590 613 590 613 0.98

15 25 0.077 5.9 8.2 5.0 1 23 618 640 618 640 0.98

16 25 5.5e-06 0.00043 21.2 1.4 1 23 646 668 646 668 0.97

17 25 0.0019 0.15 13.2 1.0 1 23 678 700 678 700 0.94

18 25 0.0018 0.14 13.3 0.2 1 23 706 728 706 728 0.92

19 25 0.0077 0.59 11.3 0.7 2 23 734 755 733 755 0.96

20 25 8.3e-05 0.0064 17.5 1.7 3 23 762 782 760 782 0.96

21 25 0.0016 0.13 13.5 0.7 1 23 788 810 788 810 0.96

22 25 7.7e-07 5.9e-05 23.9 0.5 1 23 816 838 816 838 0.98

23 25 2e-05 0.0016 19.4 3.8 1 23 844 867 844 867 0.93

24 25 2.4e-05 0.0018 19.2 3.8 1 23 873 895 873 895 0.98

25 25 0.00031 0.024 15.7 2.5 1 23 901 924 901 924 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.001	0.08	14.1	2.5	2	23	169	191	168	191	0.94
2	25	0.00014	0.011	16.8	5.5	1	23	195	217	195	217	0.98
3	25	2.4e-05	0.0019	19.2	1.1	1	23	242	265	242	265	0.95
4	25	4.4e-05	0.0034	18.4	2.8	1	23	271	294	271	294	0.97
5	25	3.5e-05	0.0027	18.7	0.5	2	23	301	322	300	322	0.97
6	25	0.00071	0.055	14.6	0.4	1	23	339	362	339	362	0.94
7	25	5.7e-05	0.0044	18.0	0.5	1	23	368	391	368	391	0.97
8	25	2.8	2.2e+02	3.3	1.8	3	23	399	419	397	419	0.91
9	25	0.53	41	5.6	4.5	1	23	435	458	432	458	0.89
10	25	3.1e-06	0.00024	22.0	4.1	1	23	464	487	464	487	0.96
11	25	0.00094	0.072	14.2	0.1	1	23	493	515	493	515	0.97
12	25	0.00042	0.033	15.3	2.2	1	23	521	543	521	543	0.99
13	25	3.9e-05	0.003	18.6	2.2	1	23	561	584	561	584	0.95
14	25	6.6e-09	5.1e-07	30.4	0.6	1	23	590	613	590	613	0.98
15	25	0.077	5.9	8.2	5.0	1	23	618	640	618	640	0.98
16	25	5.5e-06	0.00043	21.2	1.4	1	23	646	668	646	668	0.97
17	25	0.0019	0.15	13.2	1.0	1	23	678	700	678	700	0.94
18	25	0.0018	0.14	13.3	0.2	1	23	706	728	706	728	0.92
19	25	0.0077	0.59	11.3	0.7	2	23	734	755	733	755	0.96
20	25	8.3e-05	0.0064	17.5	1.7	3	23	762	782	760	782	0.96
21	25	0.0016	0.13	13.5	0.7	1	23	788	810	788	810	0.96
22	25	7.7e-07	5.9e-05	23.9	0.5	1	23	816	838	816	838	0.98
23	25	2e-05	0.0016	19.4	3.8	1	23	844	867	844	867	0.93
24	25	2.4e-05	0.0018	19.2	3.8	1	23	873	895	873	895	0.98
25	25	0.00031	0.024	15.7	2.5	1	23	901	924	901	924	0.98

Sequence Information

Coding Sequence: ATGTCATATTTTACGTTATGCAGAGTTTGTTTCACTCGTAATATACGAGTGAACCCTATCAGCAGCACACATTATCAAGTTATATATGAGAAACTTACTGGAGAAAAGATGATGATCGGAAAAGGCCATCTGGACACATTATGCTATTTATGCGCCAATGCATTACAGAAATTCAGGAGATTCCTTACAATGGCCCAGAAAGCTGAACGGGATCTCACAAGAATGCTAACAAATGGAATAGAGTTGACACAAGCATCTGCTGCATTGCTTGACGACATCAGTATCCACAAATTGTCAGTCTCCAGCATCAAGCACACATCAGTTGTAGACTTAGTGAAGGAGGAGGATGAGGTTGTGGTAAAAGTGGAGTCTTTTGGAGTTGATGCCGGACCCGTGTATGAGGATATTGATGTGCTGCCAGCCGCAGAATTTTCCGACTCGGATTCCGATCCTTTAGAAGCTATAAGAATCAAGAACGAGCGCAAAGCCAAAGCCATCGGTTTACCGTGCAATAAATGCCCGCGGCAATTCAATTCCTCCCGAGATCTCTGCCGCCACGGAACTACCACCCACAAAAAGCCACATAAATGCCCCGCGTGCAAACAAACTTATTCTAACCAAATACACTTGAAAAGGCACATGAAACAGCACAAAGACGATCAGTTGACAAACAAAACTAGGAATATCATAGAGATGAGTTTATTGGAATCAAAACATCGTACATTTGTTTGTACGCTGTGCAGTAAAAGTTTTGGGGGGAAATCACATTTAAAGAATCACATAATGGCGTTACATACAGGTGAAAAACCTCACGAGTGCAGTTTTTGCGACAAGAAATTTGTCACGCGCAGCAATCAGAGAATGCATATACGCATGGCGCATCCTGATCAGAAACCTGTCACGTGTACCGAATGCAACAAGGGCTTTGATAGAGTCATACAGCTGAAAAAACACATGGCTAGACACAAAGACCCCACATTACCCGAAGAAGATGACACTGAAGAGATAAAAAGCTACTCCTGTGCCGCGTGTGACAAAACATTCAATGCGAGGGGCCATTTGAAAACACACATAGCTCTTGTCCACTGTAAAGATAGACCATTCATATGTGACTTATGCGACAAACGATTCGTCGAAAAAAGCATGCTGTCAGCTCATTTCAGAAAAGCCCACACCGAGAAAAAGCCTTTAACGTGCATCAAATGCAGCTTAGAGTTTCACAGCGAAATGAAATTCAGAAATCACATGATCATACACAACGAAAAGGCTGAATACGATGCGTCGCAAAAACCATGCAAATCATTTTCCTGCATTATGTGTGAGAAGACTTTCACAGCCAACTGTCATTTACGACTCCACGTAATGGCAGTACACACCGGGGAGCGTCCATTCCAATGCACTATGTGTGATAAAAAGTACACACAGAGATCACAGCTAAGAACGCACATGAAATTCACACATGCGGTTGAAAAACCATTCGCTTGCGGCGAGTGTGAATCGCGATTTGATGACGTCGATGAGCTAACTAGACATATAGAAACGCATGTTGACCAAAAACCTTACAAATGCGAGACTTGCTTAAAGCTATTCCAAACAGAGATGAATTTGAGGAAGCACATGCTTAAACACGGCGAGTGTGATTACGAAAAGTACGTGAAAGTCACAACCGGAGATAAGCCTTTCAACTGTGGAATGTGCAACAAGACATTCGGCTTCAAATCGCATTTAAAAACTCATATAATGGCGCTTCATACCGGGGAACGCCCGTTCAAATGCAACATTTGTGACAAAGGATTCGTACAACGCAGCAATTTACGAGCTCACATGAAAACAGCGCACGCTTTAGAACAACACACGTGCTACCAATGCTGTAAGAACTATGGAACTGAGGAGAATCTCCGCGTGCATTTGAGAACGCACATCGGGGAGAGGCCTTTCTCTTGCAACCGTTGCGGGCAGACTTACAAACGCAAGGAAAACCTCCTTCAACACATGGCCAATCACACCGACGAGGAACTACAGCAAGAAGTATTTACTTGCGATGTCTGCTCGCTGCGATTCAACTCCAAAGAGCTACTGCAATCACACTCCACACTCCATTCGGAGATACCTCCGTTCTTATGCACGAAATGCGACCAGCAATTCACGACAAAACCCGGATTGATAGCGCACAACGAGATCCATTCAACCGATTCTCTCATATGCGAGCAATGTGACCTACACTTTGACGAAGAGAGAAAACTCCGTACGCATATACAGATCCACGAAAAAAAGCCCATAGCGTGTGAAGTGTGCCAAAGAATCTTCCACACGAGAAGTTTGCTGCAACGCCACATGTACAAACACAGCACAGAGCGACCGTTCGTTTGCAAAGTGTGCAACAAGGCGTTTAAGCAGGAGCGTATAATGAAAAAGCATTTGGAGATACACACTAACATAAAAAGATATGCGTGCGAGTTGTGTGACAAGAAGTTTTATCAAAAGGGTAACCTGACCGGGCATATGCGGATTCACTCCGGGGAAAAACCTTATGTGTGTGACCGCTGCGGTCATAGCTTCAACCAAAAGAGTCATCTTAGAACGCATATAATCTTTATGCACACAGCAGATAAGCCGTACAGTTGCGATATTTGCAACAAGAGTTTTAGACTGAGGAGCTGTTTGAGGAATCATAGAATGGTGCATTCTGGGGTTCGACCGTATCCCTGCGATAGGTGTGAGAAGAAGTATTATAAAAAGAATGAATTGACTTCGCATCAAAGGAAAATGCACGGTTGA
Protein Sequence: MSYFTLCRVCFTRNIRVNPISSTHYQVIYEKLTGEKMMIGKGHLDTLCYLCANALQKFRRFLTMAQKAERDLTRMLTNGIELTQASAALLDDISIHKLSVSSIKHTSVVDLVKEEDEVVVKVESFGVDAGPVYEDIDVLPAAEFSDSDSDPLEAIRIKNERKAKAIGLPCNKCPRQFNSSRDLCRHGTTTHKKPHKCPACKQTYSNQIHLKRHMKQHKDDQLTNKTRNIIEMSLLESKHRTFVCTLCSKSFGGKSHLKNHIMALHTGEKPHECSFCDKKFVTRSNQRMHIRMAHPDQKPVTCTECNKGFDRVIQLKKHMARHKDPTLPEEDDTEEIKSYSCAACDKTFNARGHLKTHIALVHCKDRPFICDLCDKRFVEKSMLSAHFRKAHTEKKPLTCIKCSLEFHSEMKFRNHMIIHNEKAEYDASQKPCKSFSCIMCEKTFTANCHLRLHVMAVHTGERPFQCTMCDKKYTQRSQLRTHMKFTHAVEKPFACGECESRFDDVDELTRHIETHVDQKPYKCETCLKLFQTEMNLRKHMLKHGECDYEKYVKVTTGDKPFNCGMCNKTFGFKSHLKTHIMALHTGERPFKCNICDKGFVQRSNLRAHMKTAHALEQHTCYQCCKNYGTEENLRVHLRTHIGERPFSCNRCGQTYKRKENLLQHMANHTDEELQQEVFTCDVCSLRFNSKELLQSHSTLHSEIPPFLCTKCDQQFTTKPGLIAHNEIHSTDSLICEQCDLHFDEERKLRTHIQIHEKKPIACEVCQRIFHTRSLLQRHMYKHSTERPFVCKVCNKAFKQERIMKKHLEIHTNIKRYACELCDKKFYQKGNLTGHMRIHSGEKPYVCDRCGHSFNQKSHLRTHIIFMHTADKPYSCDICNKSFRLRSCLRNHRMVHSGVRPYPCDRCEKKYYKKNELTSHQRKMHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -