Vcam011438.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- clz9
- Assembly
- GCA_951394065.1
- Location
- OX596046.1:4198950-4200437[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-07 0.00019 21.8 0.0 2 44 19 61 18 62 0.85
Sequence Information
- Coding Sequence
- ATGCCACGGCATTATAAACGAACCCCTGGGACCAGACCGTACAAAAATTACACGGAAGAaacattaaatacaattttagatgaaattaaatcaaaacaaatatctgTACGGGCTGCAGCAGAAAAATATGGCATCCACAGGAACACATTATCCTCCAAGCTAAAGGGCAAAGCGCCTCTAAAACCAGGGGGTCAAACAGTTTTTAGTGAAGACGAAGAACTCGCTTTTGTTTCCCATATAGTTGCTTTGTCATCATTTGGGTTTCCCATAACTATACTGGAACTGCGTTTAATAGTTAGAACGTATTTAAATAAACAGGGTAGACAAGTGAAGGGTTTTGCCAATAATTATCCAGGAAAAGAGTGGGCATATTCGTTTATGTCACGCCATAAGGCCCTTCTTTCCAACAGAGTGGCTAGAAATATCACCCATGGCCGTGCAGAAATGAATGAAGAAATCGTTAATGACTTTTTCAATCATTACGAAAAAGAAACAGAAAATGTGCCTGCTTGTAACATCTGGAACTATGATAAAACTTGCCTTGTTGATGACCCTGGTTCCTTGAAAGTAATATCCAGACGAGGAACAAAATAtccagaaataataaaaaaatcttcaaaagcATCTACATCAATCATGATATGTGGTAATGCAGCTGGTGAAGTAGCGCCCGTCTACGTTGTCTATAAAGCTGAGAATATGTGGGCTACGTGGACAGAAAATGGACCTCCTAATGCGCGTTACAACAGAACAAAATCTGGATGGTTTGACGCCAGATGTTTTGAGGACTGGTTACATTTCACCATGCttcctattttaaaaaaacagaCTGGCAAGAAGATTTTAGTGGGTGATAATCTCAGTTCACATTTGAGCTCGGCGGTTATTTCTAGTTGTCAAGAAAATAACATTGCATTTATTGCTTTGCCCCCCAACGGAACTCATTTATTGCAACCACTAGACGTTGCCTTTTTTCGGCCCATGAAAATTGCTTGGCGAAAAATACTAAACGAGTGGAAGAACAGCACCCAAAACAGCAGAAGCAGTTCTGTTCCAAAGGATCAGTTTCCCATGCTTTTAAAGCAAATGATGGATCACATGAGTCCAAATTCTTGCCAAAATATGAAATCAGGGTTCAAGAAGTGTGGATTGTGCCCATTAGATAGAGATCCAGTTATGAAAAGAATGCCTAACCAACAATTAGAAGCAAGTGTGCCTGATCGTGAAATTTTAAGTGAAAGTTTTCTTGACAACCTACGAACTACAAGAATGCAGGTTACTCAGACGAGGCCATATCGAAGGAGAAGGCGTGTGAATGTTCCAGCAGGAAGGGGCATTACAGCTGCTGATTTGGTAGTCGATGCAACAACTCGTACAGTCGCCTCACCTGCGCCCCAGTCTCCAAATTCAACACTCTCCCAAATTCTACAGAGTTACACACTGTTTCACCAACACCAACAACGACGGGAACATACCTCGATTCTTTAG
- Protein Sequence
- MPRHYKRTPGTRPYKNYTEETLNTILDEIKSKQISVRAAAEKYGIHRNTLSSKLKGKAPLKPGGQTVFSEDEELAFVSHIVALSSFGFPITILELRLIVRTYLNKQGRQVKGFANNYPGKEWAYSFMSRHKALLSNRVARNITHGRAEMNEEIVNDFFNHYEKETENVPACNIWNYDKTCLVDDPGSLKVISRRGTKYPEIIKKSSKASTSIMICGNAAGEVAPVYVVYKAENMWATWTENGPPNARYNRTKSGWFDARCFEDWLHFTMLPILKKQTGKKILVGDNLSSHLSSAVISSCQENNIAFIALPPNGTHLLQPLDVAFFRPMKIAWRKILNEWKNSTQNSRSSSVPKDQFPMLLKQMMDHMSPNSCQNMKSGFKKCGLCPLDRDPVMKRMPNQQLEASVPDREILSESFLDNLRTTRMQVTQTRPYRRRRRVNVPAGRGITAADLVVDATTRTVASPAPQSPNSTLSQILQSYTLFHQHQQRREHTSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509547;
- 90% Identity
- iTF_01509547;
- 80% Identity
- -