Vcam020234.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- GLB1
- Assembly
- GCA_951394065.1
- Location
- OX596060.1:9325892-9343252[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-07 0.00043 20.6 0.0 4 38 661 696 658 701 0.89 2 2 1.7 1.1e+03 0.1 0.3 17 25 752 760 749 760 0.90
Sequence Information
- Coding Sequence
- ATGTTATCGGCGAAGCAAACACTGGCTCTGGCAGTTATACTGATTAGCTGTTACGCGGGGTTAGTCACAGCAAGAGTCCACGTTTCGGAGACAAATAAGTATCACAATGCGAGTCATCAGATCAGCATCGTTGGAGATAACTTCATGCTGGATGGGCAGCGGCTGCACATCGTGTCTGGCTCGCTGCATTACTTCAGGGTGCCGGCCGCGTACTGGCGCGATCGCTTACGCAAGCTGAAGGCAGCTGGACTCAACTCAGTTGCCACATATGTAGAATGGAGCCACCATGAGCCCGAGGAGCGACAATACCGATTCGAAGGCGATTATGATGTCGCTGCGTTTGTGAAGACGGCGGCAGAAGAAGGCCTGCATGTGCTCTTACGTCCTGGACCATACATTTGCGCGGAAAGGGATTTGGGTGGATTTCCGTACTGGATCTTAAGCAAATACCCAAATATCAAATTACGAACTACCGATAAagATTTTGCAAGTGAATCTGAGATATGGATCAATAAATTGTTCCAGCAACTAGAGCCGCTATTATTTGGCAATGGCGGGCCAATCATACTAGTACAGATAGAAAACGAGTACGGCAGTTACGGAAGTGATATGGCGTATAAAATTGAGCAGAAAAACTTGATAGCAAGACATGTGGGCACCAACGCAATCCTGTACACAACTGATGGCGCAGACGCCTCTTATTTCTCCAAAGGAGCTATTCCTGACACGCTCACTTCGATAGACTTCGGGCCTTCCAGTGGGTCCATCGTGAACACTTTTCGTCCACTGCGTCGCTTTATGCCCAGTGGTCCGCTGATGAATTCCGAGTACTACCCCGGCTGGCTCACTCATTGGGGAGAGGCCATGGCCTGCACGACTACAGAAGTCGTCGTCAGAACACTCAAGGACATGCTGGATAACAATATCAACGTTAATTTCTACGTTTTCTTTGGTGGCAGCAACTTTGAATATACATCAGGAGCGAACTACGATGGAACATACCAACCAGACATCACTTCATACGACTACGATGCGCCTTTGTCAGAAGCTGGCGACCCCACCCCGAAGTACTATGCAATCCGAGAGCTTTTGCAAAAGTATAATTTTGTTGGTACTAGCGACCCACCTCAACCTTCACACAAAGGCAACTATGGAATTGTTACTGTCGTTCCCAAACTCAATCTTCTATCTCCTGAGGGCAGAGCTACATTAGGCAAAGAGTACAAAGAAGTTGAAGGCTCAACACTTCCAACTTTTGAAGGTTTGAAGCAACGAGGAGGCTTTGTTTTGTATGAGACTAGCCTGACACAATCTGATAGCCTCCTAGTTTTGCAACAACCAAGAGATTTGGTATTTGTTTTTGTGGATGGaatattaaTCGGCAAAATTAGCCGAATGCACAAATTATATTCACTACCTTTGTCTTCTAAGAACGGCTCCCGTTTGTCGTTGCTTGTGGAGAATCAAGGTCGTATCAATTTCGGAGCTAACATACACGATTTCAAGGGAATCCTTGGAACTGTgacgtacaataataaagttTTGAATGGCAATTGGAAAATCACAGGATATCCTCTCGAAAATATGACCGCGAAAAGTTCTCTGACGGTTGTAGCAAGTGACATCCAGGTCCCGGCGTTTTACGAAGGACAGTTTACTCTGCCAGGTGGAGCTCCATTAGACACATTCTTGGATCCAACAGGATGGGACAAGggctacATCTGGATCAATGGGCACAATCTCGGGAGGTACTGGCCTACAGTGGGCCCTCAAGTAACTTTATACGTACCCGGAGTTTGGCTCAAACCAGCTCCGGAGGTAAACACCATCCAAATTCTGGAGCTGAACAAGTCTTCAAAGGATCTTAGCATAAAGTTTATAGATCATCCGATATTGGACAGGCGCGGATCTCTTCATACGTGGATACAGTCATATATTATGGATGACCCCAACAAGAAGAACGGAAAATACTCGGAGTTCGATCTCAAAACTGCCGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAACATTCCATGGTCGACGTTAAAAGATAATGTGACGAAGTACAAAACTCTACGAGAGGCTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTATTGAAATAGAACAAAAGTTACTGGCCTACATTATTGAGATGCAAGAACGTGGTTTTGGTCTAACAGTTACCAAAATAAAGCAAATTGCAATGTCTTTAGCAAAAGCTGCGAATATAAGCTGCACATTCAATGACGAAAATGGATCTGCAGACAAGAACTTAAACGACGCTGCTGTTGCCGGTACATCAGGGACTAAGCGACCTGAAACAGCCAACAATAACCTAGGAGACGCTACTGTTTCCGGTACATCAGGGACTAAGCGACTTAAAACAGCTAACAAGAACCTTGATGATGCTGTTGTTAGCGTTACATCTGGAACTCAGCGATTTGAGAAGAACCTGGATAACGCTGCTGTTTCTAGCAAGTCAAAATCTGAAACAAAAGTGAAACGAAGTAATAGAGTAAATAAAACGAATCCTGCACAtgcgaaacaacaatttaagaagaAAGATAGAACTGAAGAAGACGATTGGCTATGTGAAACATGTAATAGATGGTACTCAGAAGAGGCAGCTTCTAAAAATGGAGCAGACTAG
- Protein Sequence
- MLSAKQTLALAVILISCYAGLVTARVHVSETNKYHNASHQISIVGDNFMLDGQRLHIVSGSLHYFRVPAAYWRDRLRKLKAAGLNSVATYVEWSHHEPEERQYRFEGDYDVAAFVKTAAEEGLHVLLRPGPYICAERDLGGFPYWILSKYPNIKLRTTDKDFASESEIWINKLFQQLEPLLFGNGGPIILVQIENEYGSYGSDMAYKIEQKNLIARHVGTNAILYTTDGADASYFSKGAIPDTLTSIDFGPSSGSIVNTFRPLRRFMPSGPLMNSEYYPGWLTHWGEAMACTTTEVVVRTLKDMLDNNINVNFYVFFGGSNFEYTSGANYDGTYQPDITSYDYDAPLSEAGDPTPKYYAIRELLQKYNFVGTSDPPQPSHKGNYGIVTVVPKLNLLSPEGRATLGKEYKEVEGSTLPTFEGLKQRGGFVLYETSLTQSDSLLVLQQPRDLVFVFVDGILIGKISRMHKLYSLPLSSKNGSRLSLLVENQGRINFGANIHDFKGILGTVTYNNKVLNGNWKITGYPLENMTAKSSLTVVASDIQVPAFYEGQFTLPGGAPLDTFLDPTGWDKGYIWINGHNLGRYWPTVGPQVTLYVPGVWLKPAPEVNTIQILELNKSSKDLSIKFIDHPILDRRGSLHTWIQSYIMDDPNKKNGKYSEFDLKTAVENVLSSTMTVYRASKEFNIPWSTLKDNVTKYKTLREANQDAQIVMSKIGRPFALPIEIEQKLLAYIIEMQERGFGLTVTKIKQIAMSLAKAANISCTFNDENGSADKNLNDAAVAGTSGTKRPETANNNLGDATVSGTSGTKRLKTANKNLDDAVVSVTSGTQRFEKNLDNAAVSSKSKSETKVKRSNRVNKTNPAHAKQQFKKKDRTEEDDWLCETCNRWYSEEAASKNGAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -