Vcam004288.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596037.1:13660325-13660948[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-08 2.4e-05 24.6 0.0 2 40 17 56 16 60 0.87 2 2 5.7 3.6e+03 -1.6 0.0 22 31 156 165 154 170 0.85
Sequence Information
- Coding Sequence
- ATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAACGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGTAAGAAGACTTGCGTATGAATTTGCCAAAGCTAACAACCTGAAGTATCCACCGTCTTGGGATATTAACAAAATGGCAGGGATAGATTGGGTGCATGGTTTTCGCCAAAGAAATACAGACCTGAGCCTAAGAAAACCTGAAAACACCAGTGCTGCGAGATCATACGGGTTCAACAAGACAGCCGTCGATCGCTTCTTTGCCAATCTTGAATCGGTTTATGTCAAACATAAACTAACTGCTGATAggatttataattttgatgaatCGGGGATATCAACAGTGCTGGATACGCCAAAAGTCTTAAAATAG
- Protein Sequence
- MPRKYEKKNTRCSDIDEDAKTEAIKEVVNKTLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQVRRLAYEFAKANNLKYPPSWDINKMAGIDWVHGFRQRNTDLSLRKPENTSAARSYGFNKTAVDRFFANLESVYVKHKLTADRIYNFDESGISTVLDTPKVLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509540; iTF_00825592;
- 90% Identity
- iTF_01509540; iTF_00825592;
- 80% Identity
- -