Vcam007604.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596041.1:9998288-10000357[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-12 3.6e-09 36.8 0.1 1 41 9 49 9 53 0.94
Sequence Information
- Coding Sequence
- ATGCCTCCCAAAAGAGCATTATGGTCAGAAGATGATCTCATCTCAGCTGTTAGAGCAGTACAAAGAGGAACTCTGAGTACGTATAAGGCTGCGGAAAGATATAAAGTTCCTAGACGAACAATCAGAAATCATCTGCAGACTGGcattttaaagaaaactttgGGTCGTAAACCTATATTGAGTCCGGAACAGGAAGCTGAACTTGCGAAAAGGATAATCAGCGATGTTGGCAAATGCGCAGGTAAAGACTGGTTCAAGGCGTTCTTGAAAAGGAACCCTGAAATATCAGTGAGAAAAGCTCAATTTATGAACCCGGCTCGAGCCCAAAAACTTAATAGATTTATAGTTGATGATCACTTCGCAAAACTGAGGACTATCTATGAGAACCTTGACTTACATGGTCATCCCGAAAGAATTTATAATATGGATGAGAAGGGATGCCGTCTAACAATTCACCACCAGCAAAGCGTTTTGGCCAAAAAAGGTGCAAAAAGGGTTCATTTGCAGTCTTCTGAACACGCTGAAAGTGTTACAATTGCAGGATGTGTGAATGCACTCGGTACTGCCATACCGCCAATGGTCATATTTAAGGGCAAACGGTTAAAGCCAGAACTATACGATAACTTGCCACCAGGATCATTGGTAGAAAAATCATCAAAGGGGTACATGACCAATGAACTTTTCAAGACATTTTTAAACCATCTGGCTAGATACAAAAGCGCGGGGCCATGCCTTTTGATATTTGATGGAGCAGCATGTCATTTAGATCTTTCCATTGTCGATATTTCCGACTCTCTTAACATTTCGCTGTACTGCTTACCATCAAACACAACTCACGAACTGCAGCCCCTCTATAAATCCGTTTATCGATCTTTTGAACATCACTGGGATGCTGAAGTGCTGTTATTCTTGGACCAAAACCGAGACAAAAAACTCACTAAAGCACGCTTTAATGTCATTCTTTCAAGAGTTTGGTCTAAATGTATGACACACAGTAATATCATAAATGGCTTTAGCGCGACTGGCTTGTATCCCTTCAACCCACAGGCCATACCAGAAACGGCTTTTGCTCCATCAATTTTAACGGAGGTCCCAGCACCTGATGGTCAACAAGAGGATGTACCATCTCTTGATTATCCTCGAGCAAGAGCTCCAGAACCCGGTAATACTTCGCCATCTGTTTTGACAGACATTACTATGTCTGACCTCGACCAAGAGAATGTGTCACCTATTGATTATCCTCAGCTGAAGACTCCAGAACCTGGTTCTAGATCACCGTCAATTTTAACACAGATCCCAATACCCGACGTCGCAAAAGAGAATGTGTCACCTGTTGATCGTCTTTTACCAAAGACTTCAGAACCCGGTAATAGACCACTAGCTAAACAATTGGCAACATCAACAGAACAGACGCCAAGGGAGCCAAGCACACAGAGTAGCTATTACCGCATAGTTTATGGTACAAGCTCCAGTTCAGACGATTCTGAAGAAGATGAAGTGCCGCTTGctcagttaaaaaataataaagtttatgATCTCATGCCCACACCAGTTAAAGTTCAAGAAAAAACACCGACTGTCAGACGAAAAGCCATTAATTATCGAGGTACTCCAGTCACAAAAGATCtgtttgataaatatattgaagagaaaaaaaaaataaggataaGAATGAtaacaaaagtaagaaaaatgaGAAGATCAATCAAGAAGATCAAAGAAGGAAACAAAGATAGAgcagaaaatattaaatctaaaaagACTTCAAGTCCAAAGAAAGCTGAAATCGCATCCGCAAGAAAGTCTATCACCAAAGATACTGCACAAAAGCAAGCGAGTTGGTACTGTCATGCCTGTCAAGTAGACAGCATGGACGATATGAGACAATGCTCGAAGTGCTCCAAGTGGTATCATGAAGAGTGTGTCGGGTTATCAGTGGATGATTCTGATGACTTCCAATGCCCTGATGGATGCTAA
- Protein Sequence
- MPPKRALWSEDDLISAVRAVQRGTLSTYKAAERYKVPRRTIRNHLQTGILKKTLGRKPILSPEQEAELAKRIISDVGKCAGKDWFKAFLKRNPEISVRKAQFMNPARAQKLNRFIVDDHFAKLRTIYENLDLHGHPERIYNMDEKGCRLTIHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLKPELYDNLPPGSLVEKSSKGYMTNELFKTFLNHLARYKSAGPCLLIFDGAACHLDLSIVDISDSLNISLYCLPSNTTHELQPLYKSVYRSFEHHWDAEVLLFLDQNRDKKLTKARFNVILSRVWSKCMTHSNIINGFSATGLYPFNPQAIPETAFAPSILTEVPAPDGQQEDVPSLDYPRARAPEPGNTSPSVLTDITMSDLDQENVSPIDYPQLKTPEPGSRSPSILTQIPIPDVAKENVSPVDRLLPKTSEPGNRPLAKQLATSTEQTPREPSTQSSYYRIVYGTSSSSDDSEEDEVPLAQLKNNKVYDLMPTPVKVQEKTPTVRRKAINYRGTPVTKDLFDKYIEEKKKIRIRMITKVRKMRRSIKKIKEGNKDRAENIKSKKTSSPKKAEIASARKSITKDTAQKQASWYCHACQVDSMDDMRQCSKCSKWYHEECVGLSVDDSDDFQCPDGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509522; iTF_01090626; iTF_01090628;
- 90% Identity
- iTF_01090626; iTF_01090628; iTF_01509522;
- 80% Identity
- -