Vcam023733.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:7242860-7243717[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-12 1.2e-09 38.4 0.1 1 41 9 49 9 53 0.94 2 2 9.2 5.7e+03 -2.2 0.0 16 23 125 132 122 132 0.81
Sequence Information
- Coding Sequence
- ATGCCTCCCAAAAGAGCATTATGGTCAGAAGATGATCTCATCTCAGCTGTTAGAGCAGTACAAAGAGGAACTCTGAGTACGTATAAGGCTGCGGAAAGATATAAAGTTCCTAGACGAACAATCAGAAATCATCTGCAGACTGGcattttaaagaaaactttgGGTCGTAAACCTATATTGAGTCCGGAACAGGAAGCTGAACTTGCGAAAAGGATAATCAGGTATGCTGAAATAGGCTTGCCAGTCATACCGAGAATACTGCGTCGATTGGTGTATAAATATTGTGAGCAAAATGAGATAAAGCACAATTTTAGCGATGTTGGCAAATGCGCAGGTAAAGACTGGTTCAAGGCGTTCTTGAAAAGGAACCCTGAAATATCAGTGAGAAAAGCTCAATTTATGAACCCGGCTCGAGCCCAAAAACTTAATAGATTTATAGTTGATGATCACTTCGCAAAACTGAGGACTATCTATGAGAACCTTGACTTACATGGTCATCCCGAAAGAATTTATAATATGGATGAGAAGGGATGCCGTCTAACAATTCACCACCAGCAAAGCGTTTTGGCCAAAAAAGGTGCAAAAAGGGTTCATTTGCAGTCTTCTGAACACGCTGAAAGTGTTACAATTGCAGGATGTGTGAATGCACTCGGTACTGCCATACCGCCAATGGTCATATTTAAGGGCAAACGGTTAAAGCCAGAACTATACGATAACTTGCCACCAGGATCATTGGTAGAAAAATCATCAAAGGGGTACATGACCAATGAACTTTTCAAGACATTTTTAAACCATCTGGCTAGATACAAAAGCGCGGGGCCATGCCTTTTGATATTTGATGGAGCAGCATgtcagtag
- Protein Sequence
- MPPKRALWSEDDLISAVRAVQRGTLSTYKAAERYKVPRRTIRNHLQTGILKKTLGRKPILSPEQEAELAKRIIRYAEIGLPVIPRILRRLVYKYCEQNEIKHNFSDVGKCAGKDWFKAFLKRNPEISVRKAQFMNPARAQKLNRFIVDDHFAKLRTIYENLDLHGHPERIYNMDEKGCRLTIHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLKPELYDNLPPGSLVEKSSKGYMTNELFKTFLNHLARYKSAGPCLLIFDGAACQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157585;
- 90% Identity
- iTF_01509517;
- 80% Identity
- -