Vcam008047.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596041.1:14898407-14899876[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-13 3.6e-10 40.0 0.0 2 38 8 45 7 50 0.89
Sequence Information
- Coding Sequence
- ATGTCAAACAAAAAGTACTCCGACGAGGACCTCGCCAAAGCTTTGGAGGATATAAAAAATGGAGCCATGTCTATATATCGAGCATCTAAAGTATATAACATACCTAACCAAACCTTGCAtgataaaattaacaaaaaatacaaaaaacaagaGTCAGCTGAAGCTCCAACAGTCCTGAAATCTACAGAAGAAGCTTTGTTGGTAAAATGGGTGCTGCATATGGCTGAAATTGGATTTCCAGTAACAAAAGATCAGTTGCTGCACTTGGTAGCTAAATTACTGCTAGAATTGAAGCGACCAAATCCATTCAAAGACGGAGTTCCTGGCAGACATTGGTACGAAGCATTTCTGAAAAGAAATCCAATAATAAGTAAGAGAGTATGTCAAGCATTGACTACTGCCCGTGTAAATGCTACTGAAGAAAAAATTCAAGGTTGGTTTCAGAGAGTCCGAAAATATTTCGAGGACAACAATCTCATGGCTGTATTGGAAGACCCCTCACGTGTGTTCAACTGCGATGAGTccgctttttttttgtgtcctaAAGGTCAACCAGTCCTTGCCAGAAAGGGGGTGAAAAACGTTCACTGCCGATCTGGCAATGACGATAAGGAAAATTTAACGCTCTCTCTCGGCGCGTCAGCTGACGGAAAACTAATGCCGATATTGGCATTATTTCCGTATAAAAGGATACCGcaacatattttgttaaaatatccCAAGGATTGGACCATCGGACGTACTGACTCGGGATGGATGACATCAGAGGCATTTTTTGAGTACGTAGCTAACAAGTTTGAACCATTTTTGAcgaaagaaaatattaaaagacCTGTCGCTTTGTTCTTGGATGGACACGTTTCGCATCTGTCGCTCCCATTATGTGAATTTTGCAAAGAAAAAGATATAGTGCTGATAGCTCTGTTGCCTAGCGCCACACATGCTTTACAACCTATGGACGTTGCAGTATTTCACAGCCTCAAAAACGCTTGGAGTAAAGAGGTACATACTTGGAGAATGGAGAATAATGGCAGTCGCTTAAAGCGTGAAGATTTTGGCCCGGTGCTTGAAAAAGCCATAAGAAAAACGCTGCGGCCAGAAATTATTCAAAATGGTTTTCGAAAATCCGGCCTCTTTCCCTTCGATGAAAATGCAGTAGATTatgaaaaaatacctaaatcttCTGCGGTATCAGCGACAAGTTCTGGCACAAGTACTCCCACAAGTTTGAACTCGTTAAAAAGCAGCAACTCTTTAGGAAGCAGCAAATCGTTACAATCTAAAGACCTTATAAAATGGTTCGAGATGAATTTAGATCCTCATAAATTAATTGAGTTCCGGGAATGTTCTGGGGAATGGACAGGCAATGTGAAAGACCAGTCTGTACTATTTCTGGAAGCGATTAACGCAGACTTGCATGAATCGTGCACCTCGACCAGATTCAATGAGTCTTGGCAACGCCACTCTTGA
- Protein Sequence
- MSNKKYSDEDLAKALEDIKNGAMSIYRASKVYNIPNQTLHDKINKKYKKQESAEAPTVLKSTEEALLVKWVLHMAEIGFPVTKDQLLHLVAKLLLELKRPNPFKDGVPGRHWYEAFLKRNPIISKRVCQALTTARVNATEEKIQGWFQRVRKYFEDNNLMAVLEDPSRVFNCDESAFFLCPKGQPVLARKGVKNVHCRSGNDDKENLTLSLGASADGKLMPILALFPYKRIPQHILLKYPKDWTIGRTDSGWMTSEAFFEYVANKFEPFLTKENIKRPVALFLDGHVSHLSLPLCEFCKEKDIVLIALLPSATHALQPMDVAVFHSLKNAWSKEVHTWRMENNGSRLKREDFGPVLEKAIRKTLRPEIIQNGFRKSGLFPFDENAVDYEKIPKSSAVSATSSGTSTPTSLNSLKSSNSLGSSKSLQSKDLIKWFEMNLDPHKLIEFRECSGEWTGNVKDQSVLFLEAINADLHESCTSTRFNESWQRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01280124;
- 90% Identity
- iTF_00710131;
- 80% Identity
- -