Vcam004289.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596037.1:13661695-13669973[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 4e-08 2.5e-05 24.6 0.0 2 40 17 56 16 60 0.87 2 6 2.5e-07 0.00016 22.0 0.0 2 40 150 189 149 193 0.87 3 6 4e-08 2.5e-05 24.6 0.0 2 40 283 322 282 326 0.87 4 6 2.5e-07 0.00016 22.0 0.0 2 40 416 455 415 459 0.87 5 6 2.5e-07 0.00016 22.0 0.0 2 40 549 588 548 592 0.87 6 6 2.5e-07 0.00016 22.0 0.0 2 40 682 721 681 725 0.87
Sequence Information
- Coding Sequence
- ATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAAAGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGAGGATAAACGCGCGGGAGGGCTTCCGTCCCGCTGCTTCAGAGCCTCCAACCCGCCGCTTCAGAGCCTCCAACCCGCCGTAATCATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAACGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGAGGATAAACGCGCGGGAGGGCTTCCGTCCCGCTGCTTCAGAGCCTCCAACCCGCCGCTTCAGAGCCTCCAACCCGCCGTAATCATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAAAGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGAGGATAAACGCGCGGGAGGGCTTCCGTCCCGCTGCTTCAGAGCCTCCAACCCGCCGCTTCAGAGCCTCCAACCCGCCGTAATCATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAACGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGAGGATAAACGCGCGGGAGGGCTTCCGTCCCGCTGCTTCAGAGCCTCCAACCCGCCGCTTCAGAGCCTCCAACCCGCCGTAATCATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAACGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGAGGATAAACGCGCGGGAGGGCTTCCGTCCCGCTGCTTCAGAGCCTCCAACCCGCCGCTTCAGAGCCTCCAACCCGCCGTAATCATGCCGCGAAAATACGAGAAAAAGAATACTAGATGTTCTGATATAGATGAAGATGCGAAGACAGAAGCTATAAAAGAGGTCGTAAACAAAACGTTGTCTATCAGAAAATCcgctgaaaaatataatatcaaaccaTCAACTCTTATGAGTCGCTTGGTGAAGTCTCGAGAAGATGGAAAAGAAGACCACATTCCTGCACGAGCATTCTGCAACAAGTTTGCCACCAAACAAGTATTTTCAAAGGATGAAGAGGCTCTTTTAGCCAAGTATATCAGTGACTGCTCAAAAATGCACTATGGACTAACACTTGTACAGGAGGATAAACGCGCGGGAGGGCTTCCGTCCCGCTGCTTCAGAGCCTCCAACCCGCCGCTTCAGAGCCTCCAACCCGCCGTGTCAGTTGCTCCGCGACACCAGATAGGGTAG
- Protein Sequence
- MPRKYEKKNTRCSDIDEDAKTEAIKEVVNKKLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQEDKRAGGLPSRCFRASNPPLQSLQPAVIMPRKYEKKNTRCSDIDEDAKTEAIKEVVNKTLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQEDKRAGGLPSRCFRASNPPLQSLQPAVIMPRKYEKKNTRCSDIDEDAKTEAIKEVVNKKLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQEDKRAGGLPSRCFRASNPPLQSLQPAVIMPRKYEKKNTRCSDIDEDAKTEAIKEVVNKTLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQEDKRAGGLPSRCFRASNPPLQSLQPAVIMPRKYEKKNTRCSDIDEDAKTEAIKEVVNKTLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQEDKRAGGLPSRCFRASNPPLQSLQPAVIMPRKYEKKNTRCSDIDEDAKTEAIKEVVNKTLSIRKSAEKYNIKPSTLMSRLVKSREDGKEDHIPARAFCNKFATKQVFSKDEEALLAKYISDCSKMHYGLTLVQEDKRAGGLPSRCFRASNPPLQSLQPAVSVAPRHQIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -