Vcam016052.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596053.1:3642076-3646264[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-11 3.5e-08 33.7 0.0 4 39 151 187 148 191 0.89 2 4 7.5e-11 4.7e-08 33.3 0.3 2 39 203 240 202 243 0.92 3 4 2.2e-15 1.4e-12 47.8 0.1 2 45 258 302 257 302 0.96 4 4 3.6e-17 2.3e-14 53.5 0.0 1 44 309 353 309 354 0.95
Sequence Information
- Coding Sequence
- ATGCTCGGGTGCGGAAGTGCTGTTGTAAAATTTGAACCGTCATCTGATGAAGAAGACAGTCTTCAGCTACCTGACCTCTTTCTGAACAATCCgaCTCAAGAAGAGCTGGCCCCGCTGACGCCGGCGGGGCCCGCAGCTACCCCAGTCCCCGTCGCCGTCTGCGTCAAACAAGAGCCAGCGGACACCCCGGCCTCGGATCTAGAGACTTTGGAGTCCACATCGCACTACACGTTGAAATTTGTTGTACAGAGTTCTTTTTTGGAGCAACACATTGCGATATTGAGAGCAAATGAATTGCCTGATTCTGCCAACTTCACTCCGCTGCAAACGGTCAAGGAAGAGCCGCCCGCCGAGGGAGAAAACCAGCACCATAGCAGTGACGAGTTGAGCGACTCTTGCGGCCTGGCGGAGCCGTCGACGCGTGGGAGTCCTAAGGGCTGGACGCAACAGGACATGGACAACGCACTCGATGCTCTCCGGAACCACAACATGAGCTTGACTAAGGCATCAGCAACATACGGCATTCCGTCAACTACCCTCTGGCAGCGAGCTCACCGTCTCGGCATCGACACTCCGAAGAAGGAAGGCACCACCAAATCGTGGAGCGAAGCGGACCTGCGCGGCGCACTCCAGGCACTCAGGGCCGGCGCTATATCTGCTAACAAAGCCAGTAAGGCTTACGGCATTCCAAGCAGCACGCTCTACAAAATAGCTCGCCGCGAAGGTATCCGACTGGCTGCGCCATTCAACGCGGCGCCGGTGTCATGGCGGCGCGGCGACTTGCAGCGCGCGCTCGCCGCTATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCCGCGACACAGTATGGGATACCTACCGGCACACTATACGGTCGATGTAAAAGGGAAGGCATAGAGCTATCTCGATCAAACCCCACGCCTTGGTCTGAAGACGCTATGGGAGAAGCTCTAGAAGCAGTCAGGATTGGCCAGATGTCAATAAACCAGGCAGCTATCCACTTCAACCTGCCGTATTCTTCACTTTACGGAAGATTCAAGCggataaaataccaaaatcaaaACCAGGTTGTGACGCAAAATGTACAGAATCCTCCCGAAATGGTCCAAAGTCAGGGAGAGCTTTACTATCATCAGTTGCCGATGTATGCAGAACAAAATCCTTCCTTAGTGCAGTACCATCACGAATTCGTTCCAAATACGCAAAGCAATAACGTACTTCTAGACCCTAACTCGGGTCCAGCGGTGTATTACAACCAGAACTACAGCAGCATTTTGACTAGATGA
- Protein Sequence
- MLGCGSAVVKFEPSSDEEDSLQLPDLFLNNPTQEELAPLTPAGPAATPVPVAVCVKQEPADTPASDLETLESTSHYTLKFVVQSSFLEQHIAILRANELPDSANFTPLQTVKEEPPAEGENQHHSSDELSDSCGLAEPSTRGSPKGWTQQDMDNALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGTTKSWSEADLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRIKYQNQNQVVTQNVQNPPEMVQSQGELYYHQLPMYAEQNPSLVQYHHEFVPNTQSNNVLLDPNSGPAVYYNQNYSSILTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -