Vcan001015.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:2-10740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.8 8.9e+02 1.0 1.6 1 21 75 95 75 96 0.92 2 18 0.14 17 6.4 0.7 1 23 102 125 102 125 0.87 3 18 0.18 20 6.1 11.3 1 23 135 158 135 158 0.95 4 18 0.067 7.7 7.5 0.1 1 23 283 306 283 306 0.92 5 18 0.16 19 6.3 0.1 5 23 313 332 312 332 0.92 6 18 0.24 27 5.7 0.9 2 19 387 404 387 407 0.82 7 18 5 5.7e+02 1.6 0.9 3 21 441 459 440 460 0.91 8 18 5.1e-06 0.00059 20.4 1.2 1 23 467 490 467 490 0.96 9 18 1.3 1.6e+02 3.4 1.8 1 23 498 523 498 523 0.90 10 18 0.049 5.6 7.9 0.2 2 21 555 574 555 575 0.95 11 18 2.5 2.9e+02 2.5 2.2 2 23 583 605 582 605 0.95 12 18 0.006 0.69 10.8 4.4 1 23 616 639 616 639 0.94 13 18 0.0083 0.96 10.3 0.0 1 21 673 693 673 694 0.94 14 18 0.0018 0.21 12.4 1.0 1 23 701 724 701 724 0.94 15 18 0.086 9.9 7.1 1.5 1 23 892 914 892 914 0.94 16 18 0.016 1.9 9.4 1.1 1 21 923 943 923 946 0.90 17 18 0.019 2.2 9.2 2.1 1 23 1084 1107 1084 1107 0.94 18 18 0.14 16 6.5 0.1 2 23 1177 1199 1176 1199 0.89
Sequence Information
- Coding Sequence
- ATGACTAGAAAAAAAAGTAAATCTGCGTCAAAAAGAGCTGTGACAAAGAAGGTTAAAAATAAAGTGGTCAATCGGAGTACTCGTTCAAAAAATGAATCGATTAACAGCGAAATTCAGAATCTTATCAATAAGACCAATAGCAAAGGATTCCAACAATATAATACCTTGAAGAAGCCACTAAAACGTTTAAAGAGTCTTAAAAAATTTCCAAAACTGAATAAATTTCAGTGTAGAGTGTGTCGTCTGGATTTTCTAAACCAGCTTTCATTTCGAAATCACAAAAAACGATTCCGGCGTGCTAATTATAGCTGCATTGAATGCGACACAGAATTTACGGACAGAGAACAATTGGGAATTCATTTCGAGCACACCCATACGGGCGTCTCTATTCCCGGATACCCTCATAAGTGCCACGTATGCGGTCAGGTTTTTATGCACAAAGCTTTCCTGCACGCTCATTTATGTCACAATCATAAACAAAACTGGCATGCTACGAATATTTTGTCAATTAGCAATGGGAAAATAACGTGGGACAAAACTGAGTGGGGAGAGATTATAGAAAATTCTGTTCGAAGCTTGGAAAAAGTAACAAGTGAAAAGTTTAATCAGATTGGTAGCAATGTGAGTTTCGAAAACTATGGTTGTATGGAAAGTGAAATGGCAATTGTTAAAAAAGAGGTAGGAGCTCAAGAAATAACAATTCGTCATAAACGTCATACTAACTCGCTAGAACTGAAAAATAAGAATCGTATACTGAATAAGAGCGATGCCGACCTCAGGACACAGTACGCTTGCAAACCGTGTTACGTATTAGTGCAAAAACTGAGTCTAAATACAATACCTGTATTTGTCTGCAAACTCTGTAACGTGATTTTTCCTTCAGAGGAATTGAAAAAAAATCATATCACCGGTGCTCACACATTTGTAGAATCAACGATATGTGATAAAAGGCTGCCAACCGAAAGTTGGATGCGCCGTCACTTTCGCGATGAACATTCAATAGGCTGTGATGAGAACGAGACGTGTGTGTGTGGCAAAAATATGCATGTGCCTGCAACGCTTGAAGAACATTTTTTCCAGCATTCCATGCGCACTTATATATCGGCACTGAAGCCTTTAACTGTGGCTTATAAGTGTCGGCCATCAGAAAAGACTGAAGTTTGTAATAACTGCGGCAAAACTTTCTGGTTGAAAACTTGTCTCGAAATTCATAATCGAGACTGCAGTCAAGTGATCGCTGATTCATCGGACCCAATGACTCTGCAAGTTAACTCAAAACGTAGGATCGGCCAAGAGACAATTGACTTCAATGAAGTTTTTTGCCGCGTTTGTTGCGCCCAATTTTCAACACGAATAGCACTTTTAAATCACATTCGTTTCTACGCCAGAACGAAGCGATATCGTTGTCATATATGTGGCGCTTCATTCAATGGAAAAAGTTTATTGAAAACCCATACACGTGATGCTCACACCTTTCATACCGCTTATTATTATAGCTGTTACTGTATAATTTGCGATCAAGGCTTCGCCAAGAAAATCTATCGTCGCATACACATAGCGCATGTACACGGTGAAAAATATCCTATCAAAATGACGAGCAAACCAACGATTGAAAGCAGATGTAATTATGATAAACGCTTGGAACATGATGATAATGATCGAAAGTGCCTAATTTGTAATCTTCAGTTTGTTAGCCGAAAACTTTTCATTGAGCACATCAACTATTTCAAAACGGAAGAAACGATCGTTTGTGGTGTTTGCAGTCAGTCACTTCAAGGTCAATACAATGCTCATCGTCACTACAAAATGTGTCATTATCCTGCCGATATACGAGAAGTATACCAGCACAAGTGTCCGATTTGTAAAGAAGCTTTTGCATTCAAGTTGCATTTAAAATCACACGGTAAACATGTCCACGGGAAAAATATTCATGGTATAAATCTAATGAGGAAGCAAAATAACGAGAAGATTGGTGATTGCTCCGCGACGTTGTCTACATCGGGAGTTGTTAGATATCACATGTGTGCTATTTGTGAGGTGAGCTTCCCAAATCTTGATTTCTTGACTGCTCATCAAATGGAATACGAAATGAATGGAAAATTCGTATGTCCACGATGTGGAAGAAGATGTGGCACATCAACTTCGCTGCTTGATCATTTATCGTTAAATCACTCCACCGCTATCCATGACAGTATCAAGTGTCGAAGGTGTGACGAATATTTCCTCACACCAGCAATATGGGTATCACACATGAAGCACTGTCACATGACTGATGCGATACAATTACCGGAAACATTTCTGGAGTCACATATAAACTTCTTAAACAAATTCCAAGTTACGGAGCTGAAATCTTTACCAGTCTGTAAACAAATTTCTAATGTCGCGATGAGTACGCAGGCTGCGCACCAATCGAATCGTAACTCAACGAAAAAAAAGTTGGTGAATTCGAAACAGCATGAATGTGAGACAGCAGAATTATTAAGTGAGAACGACGTCGAAAAACAAATTGTAATCGATATTACCGAGGAAATTGGAATTGAGCGTGGACAAATGATTTGCAGTAGTAACATACTAAGTACGGAGAAAAAATGGCACTGCCGTATATGTGGTATCGATTGTCTTGGAGCCGATGGACTTGCAAAGCACAATGCCCGTTACGCGAACGAAGGTCGTTACAAATGTGAAATCTGCGCCAGAAGATTTAAGTCGATGAAAGCCTGTCAGGAACACGTACTGATTCATCGTTGTCGAAAGATTAAAAATGTTTACCAATGTGAAGTGTGCCATGAATCAGTCGGTAACCCAACCGCGTTGAAATCACACAATGCTCATTTCCATGATGGGAAGACTCGAACTCTTGAAGCTGTATCACCACGTTTTGACAAGGCATCTAACTCGCAGATCTCCATCTGTTCATCGCAGTCTAATAGCGTGATGCCGTGTTACAACGGTTCCAGTTGTGCAGGAAAATGCTCGATTCTTGAAAATCAATTCGTACAATTAAATCCCAATGACGAATCCGCTGCACTCGACATCCTTGATTCTAAGCTTTTGGCAAACGATGTAAAAAACTGCCCCACCAGTAAATCGTCTGTAACAAACGTGGAAGGTGAAACTTTGTCGGATCAAATCCCGATGTGCGTTACGGGAGTGAATTCACTCACCCCTTCGTCAGTTAGCGTGCCGGAAAAAAAGGCTGAAACATCCGTTGTCCAATCTACAAATAAATATTTTATTCGTCAATCATTGTTTCAGTGCGAAGTTTGTAGTTCTATATTCAACACTAAATGTTTACTAGAGTCTCACAGAACCAATATTCATAAAATTGCAGCGGAAGCTACGGAAAAAAATTTGTTGGTTGTTTTGACTGAGATAACCGGCATGGATATTATGAATTCAGCGACTATTGGTCATTTAATTCCCCTCCCAAAAGAATCTTTATCACGTAAAGATTATAGCACATTTAGTGAAGATCCGTCAAAGTCGGAAACTAGACTTCGTGATTGCAGCTCTGGCGGCAGTCCATTAAGATGCGAACCTTGTGATTTTGTTTTTCCAACCTCGCAAATGTTACAACTTCATAATAACTGGGTGCACAGCGGATCGTTTCCGAACATCGAATGCACCGATGTCAGTAATTTGAATAGTCCGGCTCCTATGCCATCAACGGTTCAGGATTCTGCGAGGCACAGCTCATTATTCGTTGATGACTTATCAATGGTTTCCGGCCCACAAGCACTTGGAGTAAACGTTGAACAACAGCAATCAAACATTATCATTCAAACTGTGTCAATACCAATTGCCATAAGTGGGGCAAACATGATAATGCATGTAACAGGTGAACAAACATCCTGCGTACAAAATAAGATCGAAAGTTCTATTAATTCTGATGCGTGTAATAGCAATAGTTTAAAAAGGAGTACACGTTCCTTCACCAAAACGATGGATACTTCGAAAAATAGAAGTGCCATGAAACGGAATGAATCTTCAGCCAATGCATGTAAAGGCGTGCTGAAAAAAATTAAACAAGAACCTAACGACTGA
- Protein Sequence
- MTRKKSKSASKRAVTKKVKNKVVNRSTRSKNESINSEIQNLINKTNSKGFQQYNTLKKPLKRLKSLKKFPKLNKFQCRVCRLDFLNQLSFRNHKKRFRRANYSCIECDTEFTDREQLGIHFEHTHTGVSIPGYPHKCHVCGQVFMHKAFLHAHLCHNHKQNWHATNILSISNGKITWDKTEWGEIIENSVRSLEKVTSEKFNQIGSNVSFENYGCMESEMAIVKKEVGAQEITIRHKRHTNSLELKNKNRILNKSDADLRTQYACKPCYVLVQKLSLNTIPVFVCKLCNVIFPSEELKKNHITGAHTFVESTICDKRLPTESWMRRHFRDEHSIGCDENETCVCGKNMHVPATLEEHFFQHSMRTYISALKPLTVAYKCRPSEKTEVCNNCGKTFWLKTCLEIHNRDCSQVIADSSDPMTLQVNSKRRIGQETIDFNEVFCRVCCAQFSTRIALLNHIRFYARTKRYRCHICGASFNGKSLLKTHTRDAHTFHTAYYYSCYCIICDQGFAKKIYRRIHIAHVHGEKYPIKMTSKPTIESRCNYDKRLEHDDNDRKCLICNLQFVSRKLFIEHINYFKTEETIVCGVCSQSLQGQYNAHRHYKMCHYPADIREVYQHKCPICKEAFAFKLHLKSHGKHVHGKNIHGINLMRKQNNEKIGDCSATLSTSGVVRYHMCAICEVSFPNLDFLTAHQMEYEMNGKFVCPRCGRRCGTSTSLLDHLSLNHSTAIHDSIKCRRCDEYFLTPAIWVSHMKHCHMTDAIQLPETFLESHINFLNKFQVTELKSLPVCKQISNVAMSTQAAHQSNRNSTKKKLVNSKQHECETAELLSENDVEKQIVIDITEEIGIERGQMICSSNILSTEKKWHCRICGIDCLGADGLAKHNARYANEGRYKCEICARRFKSMKACQEHVLIHRCRKIKNVYQCEVCHESVGNPTALKSHNAHFHDGKTRTLEAVSPRFDKASNSQISICSSQSNSVMPCYNGSSCAGKCSILENQFVQLNPNDESAALDILDSKLLANDVKNCPTSKSSVTNVEGETLSDQIPMCVTGVNSLTPSSVSVPEKKAETSVVQSTNKYFIRQSLFQCEVCSSIFNTKCLLESHRTNIHKIAAEATEKNLLVVLTEITGMDIMNSATIGHLIPLPKESLSRKDYSTFSEDPSKSETRLRDCSSGGSPLRCEPCDFVFPTSQMLQLHNNWVHSGSFPNIECTDVSNLNSPAPMPSTVQDSARHSSLFVDDLSMVSGPQALGVNVEQQQSNIIIQTVSIPIAISGANMIMHVTGEQTSCVQNKIESSINSDACNSNSLKRSTRSFTKTMDTSKNRSAMKRNESSANACKGVLKKIKQEPND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -