Vcan001290.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:81578-109859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.2 12.4 3.5 1 23 206 229 206 229 0.96 2 13 0.01 1.2 10.0 4.6 2 23 380 402 380 402 0.91 3 13 0.00043 0.049 14.4 3.5 3 23 462 483 461 483 0.97 4 13 5.7 6.6e+02 1.4 7.6 3 23 570 591 569 591 0.95 5 13 0.0082 0.95 10.3 0.3 2 23 647 669 646 669 0.95 6 13 0.0022 0.25 12.1 0.7 2 23 718 740 717 740 0.95 7 13 0.00024 0.028 15.2 0.1 2 23 767 789 766 789 0.93 8 13 0.13 15 6.5 4.4 2 23 880 902 879 902 0.96 9 13 0.01 1.2 10.0 2.4 2 23 916 938 915 938 0.94 10 13 0.0007 0.081 13.7 0.1 2 23 997 1019 997 1019 0.93 11 13 0.22 25 5.8 1.5 1 23 1105 1128 1105 1128 0.97 12 13 3e-05 0.0034 18.0 0.3 3 23 1147 1168 1146 1168 0.98 13 13 0.013 1.5 9.7 0.3 1 23 1262 1285 1262 1285 0.98
Sequence Information
- Coding Sequence
- ATGGCGTCTACAGTGGCCCGTGAACAATTGGGATTGACGATGGATCAGCAAATAAGTGAAATCGACAGTGAGAGCTCGAGCAGTTGTGAGGATCGAGAGGCGCGAAAACGTTTACGCGACGATTCGGACAACAACATTGGTGGCAGTCCAAAAAAACGACGGAAGCAAACCACGCCGGTCAAGTTTCCAGCCTCGTTGATGATTAACAACGGTGAGAGGAATGAGTTTGAGGACGGCGAGGATGACGACGACGAGGAAGAGGTGGTGGAGGAGGAGTATGAGGATGGGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGAGAGGAAGAGGAAGCGGAAGAAGAGCAAGAGAAAGGCGAAGGTGAAGAGGAGGAGGAAGAAGAGGCTAAGGACGAGGACGAGGAACGACCGAACGAGAAAAAGTTGAAAGGTGAGGCTGAACCGAGCGAAAGAAGGAACAACCGAGGACGGACTTTGGTCAACGAAGCTGACGAGACACTGCTGGAAGGTAAGCCAAGAACGTTATCACCGCAAAGGTTTGCGCGAAATATCGTCGGACAAATGACAAGCACTACTACTATCGGGGCTAATGATGAGAATCTCAACGGTGAATTTTGCTGTAAATTTTGCGCCTTTTCCTTCAGCGATAAGGAATCATTGTCGCGACATTTAGAACGCGAGCATGCGATAGTTAGTAACCCGGCTCCGAGTAGTTCTCCCCTCTCCGATCAAATTAGGATCAAATTAGAACCGACGAGTCAGATGATCGAGGATCTCGAGAGTCCGGTCAATCTTTCGAGTTTGGGTATCAAAAACTTGGTCGCCGCCAATTGGTTCCACTCTCAGACCCAGGTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAGGTTCACTCGCAATCTCAAAATTCAGATGATTGGACATCTCCGAGTTCGGTTACTTCCGTTTCCAATAATCTTCAAGCTCTGACATTCCCCGGAGCTCTAGCTCAGTATCTTCCCTTGCCGGGATTCTCTATGACCGATGCTGGACAGCTGAGCCGGCCCCCCGTCGGTCCAACACCAATTAGAATCTTTAATCCAGACGCATATTGCGATCTCTGCAACAAAGAATTTTGTAACAAATATTTTTTAAAAACCCATAAAGCTAACAAACACGGGATTTATGGGGATGGGCCTTCGCAGAATAGCGGTGACAGCGGTGTTTCCGCGGGTATGTTTACCGGGGCATTTGCGATCGGTGGCGGCGGTGGCGCCTCCATCAAGTTGGAACAATTACAGAGGCTCGAAGTTCCTACCCCGCTCGTTTCCGTACCTTTGGGTAACGGTGTACTCTGCGAAGTGTGCCATAAGCGCTTCAAAAATGACGATTCCTTGAGAAAACACAAGCAAAAAGTTCACAACGAGTCGATCGATAATCAAGAATGTCATTCTTTGCCAGCGACGGGAAGTAATACGGATGAATACCGGCAAGCCTCGCGTCACAGTCCTAGCGCGATGGAAGTACTTTTTAAACAGGAATTCGGGCTCGAACAAGAAGACTCAAAGTTTATGCCTGCCCCCCGGCATCTCTCGCCGCAATCGAGCCAACAAGCCAGAGACTCGGGTTTCAACGCGGATCGTCTGAGACGTCTCGGGGTCATAAATCCCGAGGCGTTCTGCGAAATTTGCTGCAAGGAATATTGCAACAAGTACTTTTTGCGAACGCACAAGATGAAGAGACACGGGATTTTCGTTCAAGATGGTGAAAAAGCACCGAGCAACCCTGGCAATGCAGCCTCTTGGCATCAGATTCAAACGAGCCCGCTCAATCTCATCGTGACCGATAGCATCAATGCCGTGAGCGGCGGCATTTTTTCCGAATCCACCGATCGTCCCGGAGATGATGTAGAGTGCAAAACATGTGGGATACGCTTCCAAACATTCGGTTTGTACCGTGCTCACAGAGCTAAAATTCACGAAACGGACGAGTCGTCGAAACACGATTCCGACCCCGCCGATCCGATCATCACCGATCAACCGAGTGACTCCATCTCGGAGGATCTCCAGAAACTCCAGAGCATGATTTTGCAAATAAACGGCCTGGAATCTGGTAAAACATTAAATTGCGGATTATGCGGCAGAGAATGCGAAAATTTGAGTGTTCTACGGACTCACATGAGACTCGAACACGACGGAACCCTCGAGGAGATATCCTCCTCCGCTCGGACCAGCGCATCGGAGACGTCGCACTCCAATGTCGCTACGACTGTCTGCACCATCTGCGATAAGGAATATCAAACTTGGGAAGCACTGAGGCAACATATCACCGAGGATCACGAGCGAAGCACCACCAGCATCGCCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGTCTCGAGTATGCCGTCAACGACGATGCTGACGGAATCTTTGACCGCTTCGCCGATCATCACCGTTCAAACTTGCATTCCTACGGTTACGACGCCCGTCACCGTTCCAACCCCATCATTAACGGGCTCGACGCAAACCCCAACGGGTTCGCAATCCGAAAAAAAAATTATTTCCATGACGCCAACCTCGAGTTACTGCGAGCTCTGTCGCAAGGAATTGTGCAACAAATATTTCATGAAGACTCACATGCAGAAGATGCACAATATCGAGATTGAGAATGGTTCGCAGATCGGTGGCGTAGTATGTAACATATGCAACAAGGAATTGTGCAGTAAATATTTTCTACGCGTGCACAAACAAAATACTCATGGAATCATTGACGAGACGTCGAGCACAGCAGCAGCAGCTGCTGCTGCTGCTGCTGCTGCAGCGGCCACAAACAAGCAAGAAACATTTGAATCATCGAGCAACGAGGATGCTGCGGCATTAAAGCCGGATCAGCTCGGCGATTTGAGTCATCGTTATTTCACTCATTTCACAGAGGTATGCCCAGTTTGCAGTCGTCGTTTTAGAAGTATCAAGTGGCTCAAGGCTCATCTTCTCGGTGATCATGGTAAAATGGGAATAGAAAAATGGCGCGAGCTTGAGAATCAGTATCAAAATTCATCGAAAGGCGTCGGTGGGAGAAACACCGTCGGTAGCGCCGGCCCATCTCGAACGTTAGTCCTTAATCAAAGCATAAAAATACCGAATGGTTTGGAGATGATTCAACAACAGTTGAAGAATAACGATTATGGCGGAGTACTCGGAAATCAAGTACTCTCGAGTCTTTTTGGCTCGGCGAGCGAGGATCAACGGAACAAGAGCTATCGTTGCTCTTACTGCAGTTTTACAACGACGGTGTTGCCATTTTTGTTCCTTCACGAGAGATCCCAGCATACCGGTCAGCCACACGACAATAATCCTACTGCCGAGGGCGCCGGTTCGATTTTGTGCCCGATTTGCTCGCAAGTTTTCGCTCAGCCGGATTTACTTCAGCATCATCTGTTAACGCGGCATCAATTGTCGGGTTTACTGTCTCAAATATCGGGGTTATCGACGATCAATGGCCCGAGACGACTCGAGCAGCAAGGGTCAATCGGTGTTGATAAGCAAAACAACGATACGTATGACAAATTCGAGCACGAAAGGGTTGCCGGGGGAATGGAGGAACACGCAGGAGGGGGGGGATCGTCGAGTCCCCCGTCCCACGTCGCTCTCGGAAATAGCAGCGAGACTCCGAGCAAGAGTCCGAGGGCCGAAGAGCCCGCGGTCGTTCGTGTTACGCCCCAAGGAGCTTACAAGTGCGCCGAGTGCGGTTACGCGAGTGCCAATCTCAACAGAATTAAGAAACACGTTAGAAAGGATCATAGAGCGATTGGTGGTGACCCGATCGAGAGCGTAATCGACGAGTTGAGTAAAACCCTGAGAGATGTCGCGAACAAGCACAAATTACCAGCGAGTTACGCGATGCCTCAAGACATGAATTCGAATCCCGATGGAACGACCCTGATGCAACCGTTTCTCATCGAAGAACGGGAGGTTGCTGAAAAAATTGACGATCGAATCAGCCGGGAGAAACGTTTTGCACCTGCCCTCGTTTATTTACCGTTTTCGCGGACCAAGGCTGGCAGGAATCGGAAGGTCGGAAACCAAATTGCCGCAGGTTGA
- Protein Sequence
- MASTVAREQLGLTMDQQISEIDSESSSSCEDREARKRLRDDSDNNIGGSPKKRRKQTTPVKFPASLMINNGERNEFEDGEDDDDEEEVVEEEYEDGEEEEEEEEEEEGEEEEAEEEQEKGEGEEEEEEEAKDEDEERPNEKKLKGEAEPSERRNNRGRTLVNEADETLLEGKPRTLSPQRFARNIVGQMTSTTTIGANDENLNGEFCCKFCAFSFSDKESLSRHLEREHAIVSNPAPSSSPLSDQIRIKLEPTSQMIEDLESPVNLSSLGIKNLVAANWFHSQTQVQQQQQQQQQQQQQQQQQQQQQQQQQQVHSQSQNSDDWTSPSSVTSVSNNLQALTFPGALAQYLPLPGFSMTDAGQLSRPPVGPTPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYGDGPSQNSGDSGVSAGMFTGAFAIGGGGGASIKLEQLQRLEVPTPLVSVPLGNGVLCEVCHKRFKNDDSLRKHKQKVHNESIDNQECHSLPATGSNTDEYRQASRHSPSAMEVLFKQEFGLEQEDSKFMPAPRHLSPQSSQQARDSGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIFVQDGEKAPSNPGNAASWHQIQTSPLNLIVTDSINAVSGGIFSESTDRPGDDVECKTCGIRFQTFGLYRAHRAKIHETDESSKHDSDPADPIITDQPSDSISEDLQKLQSMILQINGLESGKTLNCGLCGRECENLSVLRTHMRLEHDGTLEEISSSARTSASETSHSNVATTVCTICDKEYQTWEALRQHITEDHERSTTSIANNNNNNNNNNNNNNNNNNVSSMPSTTMLTESLTASPIITVQTCIPTVTTPVTVPTPSLTGSTQTPTGSQSEKKIISMTPTSSYCELCRKELCNKYFMKTHMQKMHNIEIENGSQIGGVVCNICNKELCSKYFLRVHKQNTHGIIDETSSTAAAAAAAAAAAAATNKQETFESSSNEDAAALKPDQLGDLSHRYFTHFTEVCPVCSRRFRSIKWLKAHLLGDHGKMGIEKWRELENQYQNSSKGVGGRNTVGSAGPSRTLVLNQSIKIPNGLEMIQQQLKNNDYGGVLGNQVLSSLFGSASEDQRNKSYRCSYCSFTTTVLPFLFLHERSQHTGQPHDNNPTAEGAGSILCPICSQVFAQPDLLQHHLLTRHQLSGLLSQISGLSTINGPRRLEQQGSIGVDKQNNDTYDKFEHERVAGGMEEHAGGGGSSSPPSHVALGNSSETPSKSPRAEEPAVVRVTPQGAYKCAECGYASANLNRIKKHVRKDHRAIGGDPIESVIDELSKTLRDVANKHKLPASYAMPQDMNSNPDGTTLMQPFLIEEREVAEKIDDRISREKRFAPALVYLPFSRTKAGRNRKVGNQIAAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -