Vcan020970.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:33967-38490[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0097 1.1 10.1 1.7 3 23 467 489 466 489 0.94 2 10 0.0091 1 10.2 2.7 1 23 495 519 495 519 0.98 3 10 0.00023 0.027 15.2 0.2 1 23 525 549 525 549 0.95 4 10 0.00095 0.11 13.3 0.2 3 23 557 579 555 579 0.92 5 10 0.0039 0.45 11.4 4.0 1 21 586 608 586 610 0.95 6 10 0.0044 0.51 11.2 0.5 2 23 618 641 617 641 0.94 7 10 2.9e-06 0.00033 21.2 1.1 1 23 647 671 647 671 0.98 8 10 3.6e-06 0.00042 20.9 0.5 1 23 677 701 677 701 0.98 9 10 0.00025 0.028 15.1 2.4 1 23 707 729 707 729 0.99 10 10 1.7e-06 0.0002 21.9 0.1 1 23 807 832 807 832 0.93
Sequence Information
- Coding Sequence
- ATGTCTCGTCAAGTGTGCAAATCGAAACAAGTACCGCGAATTTTTCAACATCGCAACCAGCCGTTTCGGAACGTCGTGAAAAACGTCGTATGGACATCCTCTGAGGTTTCATGCGTCGAGGGTGGTATCGTAAATCCACAGATTCCAACATATTGCAATTTCAGCCAAAATACAACTGACAGTTCTAATAACCATTTGAATATTCAGAAAAAAAAAGATGATCGCAAACTTCAAAATAATGTGGACGATACAACAAAGATTTCGGACACTACGGTTCTCTCTGAAGATGCCAAAGGAGAAAGACCGCTATTAGAAAAAAATACTTCCAGCACGGTTGATGATATTGAAAAATGGCTGAAAACGCGAACAGAGTCAGTTTCCAGCATAGAACTAGATGCAATGAAATCCGTTGTCGAAGCAGAGACCGAAGAGGATCGAAGTACCGGCGTAGATGGTTATCTTGCTGATGATTTACCTCATGCTTTCCTTGGCAAGGCTCCTGATGGTTTGTCCATTGACATTGATCTTTCTGACAAAAAATTGAATCTCGACTATGATCCGTTGCTCAGAGAACTTCAGAGCCACAAACTGTTGGAAGTTTGTGAGAAAAATGATGATTTCATAATGCCAGAATTCAGGCTCGATCATCTTGATCCTCTAGTTCTTTCGCCTCATGATATGATGGTTGCTGGTGAAATTTTGCCCTCCGCTAGTCATCAATCTGGTTCACCTGTCTCTACACACCTAGAGAATAATCTTAAGACTAGTGATGCAAGAACGAACAATGAAAATTCCGAGTACTCGGAAACGGAAGAACTTGTTGACAAACCTATACAGGTAGATTACAATCTGTCTGAAGATCTCGAAGAATTAGGTGAAGCAGAAAACAATGATAACTCGATGAGCCATCAAGAAATAGTATCTCCAAATGGACAAATATTGCAGCCGAAAGCCGTTCAAATCTTTGATGAGACTCAAAGCTTCGATAATATAGAAAAAGGAAAAGCGAAATCAGAATCAAGAGTGATGAAACAAAAGAGAAAAATAAGACCGAAACCAGTGGAAAATCAAATTACTTTCTTAGGAGAACCATGCCATATCGATGGAAAAGATAGTGTTATGGCTGTGGTTGCTATATCTACCGATAAAATTTCAAACATGACACAAATTGTGATAAATACTGGTATGGATGAACAGATTTACCAAGGAAAAACATCCGAACTTATCGAAGCAACTGGCAATTTTCCTAGAATTTCAAAACTGGATATGGAAAACAGCGAATTGACAACAAGAGACAGACCTCATGAAAGAATGGTTTCTAAAGCACTCGAGGAACTTGGAATTACCGACGAATCTTTGGAACCAGCTTTGATTCATGAAAGTGGCAGAACTTGGCTGTGTCCTTGGGACGAATGCAATCGAGAATTCTGCAAATTGCATGCTCTTAAAACTCACTTACTTGCCCATTTTGGTGTACGACCTTTCAAGTGCGACTACGAAGGTTGTACATGGGCTTTCCATTCGGAATTCAAGTTGAAGCGTCATAAAGAAACGCATTTGAAACGTAAGAACTTTGTGTGCGATGTGCCCGGTTGCAATCGTCGTTTTACAACAATCTACAATCTTTGGAGTCATGAAAAACTGCACACACGACCAAATCGAATAGTATGTCAGGTACCAGATTGTCAAGAAAAATTTCAGACGAAACGCGCGCTGGAATTGCACATGAAAAATCACGATCAGAGTCACGCTCCGTACATGTGCAACCATGAGGGTTGTGGCAAGCGTTATTATACGAGCAACGCATTAACGTCGCATCAAAGATGTCACAATTACAAAGAGATTGACGTTAGATGTTCGTGGCCGGGTTGTGGAAAGTTGTTCGACAAACCTTGTCGTTTAAAGGCACACGTGAGGTCGCATACTGGAAGTAAGCCTTACACCTGTACTTATCAGGATTGCCCATGGGCATTTCCCTCTTCGAGTAAGCTCAAAAGACATCAGAAAAAGCACACGAACGAGAGAAAATTCGTATGTAACATCGAAGGTTGTGGCAAAGCATTTATGCGCTCGGAACATCTTAAAGAGCATTTATTGACTCACGCCGGAGGTGGATATTTTCAATGTTACATGTGCGATGCACATTTCTCAGCGAAAAGCAGTTTATACGTACATATAAAGAAGCATCAGATAAAAGAAGCTGTAAATACGATCACCGAAAACGTCCCAAAAGATTCTAAGCAACGAGTCGATGATGCTGAAGAGCCGGGAGAAAATTGCAGCATGCAAACCGTCGTTGTCAATGACGTGACTGATCCTGCCATCGACGGAAAAGAGCTCGAAAATACAAATTATTTACAAACAGAGAGCATTGACGTGTCTGAGAGATCGGTAAAAAAAGAACACAAGGATTTTTCGTATAGTTGTGGCATGGAGGGATGTGGAAAATCATTCAAAACATTATCGAACCTTGCGAATCACATGATAGCGAACCACGAAAGCTCGATTATCGAAGATTACGAGTCACCGATCGGAGTCGTCGCTCCTTCCGAGACTTCCGATCTTGATTATATTCTTTACGCGACTCCCGGTGCTAATTCAAAAGGTCTGTGTCGAACTATGTTGCTCGAATCTTGTGATGCCATTATTATGAACGAATCACCGAAAAACGTAGAGTGTTTACCGGAACCCGAACCACCGCCTCTTCATTCTGCGTCCTCTTCTCTCCCACCTTCTCCTCCCGCTGCGTCTTCCGTCGAGGAAAATTCAAGACTATCCGAAAGTTCCTATCGCGTCACTGGAGAAAAACAAAAGTTAGATCAACAAATACGCGTTAGGAAAACTTGCCAAGGCTCCGCAAGAACTGGACTAACCTGCGAAGATGTTTGGAAATTGAAGGGTAAAACGAACGTCACGGAAACGACGAATGTCGGGGCTACTGATGTCGTTCTCGGCGAAGCCAATCTCAACGAAGCTCTGTTGCTCACAGAAGAATTACCCTCAATGTTTTATCAAGACGACATTGTAGGAACCGAGTGCCAAATTTTGTTACTCGACGGTGGAAATTCGGAAAATGCTATTGATTTACGTGGCCTCGAGTAA
- Protein Sequence
- MSRQVCKSKQVPRIFQHRNQPFRNVVKNVVWTSSEVSCVEGGIVNPQIPTYCNFSQNTTDSSNNHLNIQKKKDDRKLQNNVDDTTKISDTTVLSEDAKGERPLLEKNTSSTVDDIEKWLKTRTESVSSIELDAMKSVVEAETEEDRSTGVDGYLADDLPHAFLGKAPDGLSIDIDLSDKKLNLDYDPLLRELQSHKLLEVCEKNDDFIMPEFRLDHLDPLVLSPHDMMVAGEILPSASHQSGSPVSTHLENNLKTSDARTNNENSEYSETEELVDKPIQVDYNLSEDLEELGEAENNDNSMSHQEIVSPNGQILQPKAVQIFDETQSFDNIEKGKAKSESRVMKQKRKIRPKPVENQITFLGEPCHIDGKDSVMAVVAISTDKISNMTQIVINTGMDEQIYQGKTSELIEATGNFPRISKLDMENSELTTRDRPHERMVSKALEELGITDESLEPALIHESGRTWLCPWDECNREFCKLHALKTHLLAHFGVRPFKCDYEGCTWAFHSEFKLKRHKETHLKRKNFVCDVPGCNRRFTTIYNLWSHEKLHTRPNRIVCQVPDCQEKFQTKRALELHMKNHDQSHAPYMCNHEGCGKRYYTSNALTSHQRCHNYKEIDVRCSWPGCGKLFDKPCRLKAHVRSHTGSKPYTCTYQDCPWAFPSSSKLKRHQKKHTNERKFVCNIEGCGKAFMRSEHLKEHLLTHAGGGYFQCYMCDAHFSAKSSLYVHIKKHQIKEAVNTITENVPKDSKQRVDDAEEPGENCSMQTVVVNDVTDPAIDGKELENTNYLQTESIDVSERSVKKEHKDFSYSCGMEGCGKSFKTLSNLANHMIANHESSIIEDYESPIGVVAPSETSDLDYILYATPGANSKGLCRTMLLESCDAIIMNESPKNVECLPEPEPPPLHSASSSLPPSPPAASSVEENSRLSESSYRVTGEKQKLDQQIRVRKTCQGSARTGLTCEDVWKLKGKTNVTETTNVGATDVVLGEANLNEALLLTEELPSMFYQDDIVGTECQILLLDGGNSENAIDLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299520;
- 90% Identity
- -
- 80% Identity
- -