Basic Information

Insect: Venturia canescens
Gene Symbol: -
Assembly: None
Location: scaffold:232810-233922[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4e-05 0.0027 18.3 3.2 2 23 98 119 97 119 0.97

2 9 0.0011 0.13 13.1 1.1 1 23 121 144 121 144 0.95

3 9 0.0025 0.29 11.9 3.3 1 23 149 172 149 172 0.95

4 9 3.8e-05 0.0044 17.7 0.9 1 23 178 201 178 201 0.96

5 9 0.00059 0.068 13.9 1.8 2 23 208 230 207 230 0.95

6 9 0.00019 0.021 15.5 0.1 1 23 235 257 235 257 0.96

7 9 3e-06 0.00034 21.2 0.7 3 23 265 284 264 284 0.99

8 9 1.1e-05 0.0013 19.4 0.1 1 23 290 312 290 312 0.96

9 9 0.00018 0.021 15.6 0.4 1 23 318 340 318 340 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4e-05	0.0027	18.3	3.2	2	23	98	119	97	119	0.97
2	9	0.0011	0.13	13.1	1.1	1	23	121	144	121	144	0.95
3	9	0.0025	0.29	11.9	3.3	1	23	149	172	149	172	0.95
4	9	3.8e-05	0.0044	17.7	0.9	1	23	178	201	178	201	0.96
5	9	0.00059	0.068	13.9	1.8	2	23	208	230	207	230	0.95
6	9	0.00019	0.021	15.5	0.1	1	23	235	257	235	257	0.96
7	9	3e-06	0.00034	21.2	0.7	3	23	265	284	264	284	0.99
8	9	1.1e-05	0.0013	19.4	0.1	1	23	290	312	290	312	0.96
9	9	0.00018	0.021	15.6	0.4	1	23	318	340	318	340	0.97

Sequence Information

Coding Sequence: ATGTTTTACTTGAATTTTGTATGTTTTAGAAACTCGGGATCGAAAGCTCCGAGCGTTGCAGAAATCGTAATCACTCCGCGAATATTCAGTTATTCCGGTGCTAGAGAAAAATTAAGCAAGCATGGAAGTGATAAATCTGTGCGAAAAAGAAAAAGGAGTGCGAGCGAAGACGATCGTCGGAAAGGAAGATCGAGGGAGAATTCGCGTAGAGAAGATCGCCGTAGGAGGAGCACGAAAACGAGGAAAGAAAATGATCTCGGAGAGAGTAAAAGCGATGGAGGAGCGGCTCTTAAGTGTGACCACTGCCGCAAAAAATTTGGGTCAAAGTCAACTCTAATAGTGCATTTGAAGCAGCACCGTTACCACTGCGATCAGTGTCCAAAAGCTTTTACCCTCGTTCGCCACCTGGACGCCCACGTTGAGAAAGTCCATCGCATCCAATATTACAAATGCACCGTTTGCGATTACGAGAGCCACAACAGGAGTACGTTGAAAACTCATTTCATACGCTTGCACACAAGCAATTATGAGTTCGAGTGTGACACGTGTGGCAAGCAGTTTAAAATACGAAAGGCTCTGAATCAGCACGTGAAGCTTTACCACCTCGATGCTCCGCCCATAGTGTGCGACGTTTGTGGCCATTTCAGTAAAAATCTTCATGCCCTGAAAGCCCACCTGAGATATCGACACTACAAACCCGAATTCGTTTGTAAAATATGCAATCGCGGTATGGTGACCAAAGAGAATCTCGAGCAGCATATCGATTGGCACAAAACTCGGGAAAAAGTTTTATGTCCGACGTGCGGCAAGAAATTCCGATCACGAGATCTCGAATCTCACATGAGAGTCCACACCGGCATAAAACCCTTCGCCTGTCCCGTATGCGGTAAAAACTTTCGACGTCAAACTGCCCAGGAACAGCACATTGTCATTCACACCGGCCAACGGCCCTACGTCTGTGACATTTGTGGTCAAGCTTTCGCCCAAAAACCCGGATTGATTTGTCACAGGAAAAAACATCCTGGACCTCTGCCACCGCCCCCTGTTACTTCCATCAAAAATATCATTACGGAATTCTTACAAGAATACGCAACCGGACAATTTTCCAAATAA
Protein Sequence: MFYLNFVCFRNSGSKAPSVAEIVITPRIFSYSGAREKLSKHGSDKSVRKRKRSASEDDRRKGRSRENSRREDRRRRSTKTRKENDLGESKSDGGAALKCDHCRKKFGSKSTLIVHLKQHRYHCDQCPKAFTLVRHLDAHVEKVHRIQYYKCTVCDYESHNRSTLKTHFIRLHTSNYEFECDTCGKQFKIRKALNQHVKLYHLDAPPIVCDVCGHFSKNLHALKAHLRYRHYKPEFVCKICNRGMVTKENLEQHIDWHKTREKVLCPTCGKKFRSRDLESHMRVHTGIKPFACPVCGKNFRRQTAQEQHIVIHTGQRPYVCDICGQAFAQKPGLICHRKKHPGPLPPPPVTSIKNIITEFLQEYATGQFSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00266681;
90% Identity: -
80% Identity: -