Vcan003764.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:8304-14374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00095 0.11 13.3 0.8 2 23 23 44 23 44 0.98 2 12 0.00031 0.036 14.8 0.3 1 23 82 105 82 105 0.98 3 12 4.6e-06 0.00053 20.6 0.5 3 23 113 133 111 133 0.97 4 12 5.2e-05 0.006 17.3 3.4 2 23 140 161 139 161 0.96 5 12 3.8e-07 4.3e-05 24.0 0.7 1 23 167 189 167 189 0.98 6 12 0.0084 0.97 10.3 3.7 1 23 222 244 222 244 0.97 7 12 4.4e-05 0.005 17.5 1.1 1 23 609 631 609 631 0.97 8 12 0.00011 0.012 16.3 0.2 1 23 638 661 638 661 0.93 9 12 1.7e-05 0.0019 18.8 0.1 1 23 669 692 669 692 0.97 10 12 5.9e-05 0.0068 17.1 4.0 1 23 698 720 698 720 0.97 11 12 0.0018 0.2 12.4 4.2 1 23 726 748 726 748 0.97 12 12 1.2e-07 1.4e-05 25.6 1.9 1 23 754 776 754 776 0.98
Sequence Information
- Coding Sequence
- ATGAATTCCATTAACAAGGATTCAGAACCTTGTTCATTAACACCAAGCAAAAAAATTGGATCCCGCAGATGTTCGGTGTGCGACAAAGAATTCCAGAATGAAAAAAGTTATTTCGGACATTTAAGAATTCACAGTAATCAAGGAAATTCAAGTTGCAATGGTTGTACAGGATCAAGAAACTTTATAGAGCCTATTTCTCAGCTGAAAAGTGATGAAATTTCTTGGTTCAGTTTGACAAAGCCGTTTAAATGTGCAGTTTGCGAGAACGTTTTTGATCGAGCGTCACAGCTGGACTATCACCGGAGAAGCGTGCACTTGGGAGAAAAGTCCCAAATTTGTCAAATATGCGGGAAGGGATTTTTCCGAAAAAATGATTTACAGACGCATTTGAATGTTCACCTGGGTACGAATCAATTGATTTGCGAAATATGCGGAAGAAAATTTAATCATGTTTCAAATTTGATTAGACATTGTCGGACTCATGCGGGCTCAAAACCCTATCCTTGCACAATTTGTGGCAAACGTTTTACTCAAATAAGCTCTTTGTCAAGGCACAAGAATATTCATGGACGAAAGTTGAGCGAGGAGAAACAAAAAAAGAAAACTGGAATTATCCTGACCTGCGGAGCTTCAATGGAGGAAAGAAAAATAATGAAACGCCAACACTACTGTTGTGTCTGCGGTGAAACATTCGAATTTATGATTCTATTGAGACAGCACAAAAGAATTCACGCGAAAATTCCTGAAAAAATGAGTATAGAAAACTTTTGCAACCGGCAAGATGAAAAATTGATTTATCATGACAATACCGTTGAAAATTCCATGGAGAATTTCATGGAGTTGGACAAAATGAATTCTATCGAAGTTGAACGTGATGTTAGCATTTTAGATATTCTCAGCCCTTACAACTGCAATGACATTGAATTGTCCAACGAAGAAAATCTTGAGGATAAATTGTATGGAAATAATTCGTCTGGGCGAGAAGTAGAGAAACATTACGATATTGCACAATGTTTGGAACATTCGGATTTATCATCGAGCCATGTTTCGCAATTGGTAGATTCAATGAATCAAAAATGCCGGGCACAAATAGACAAATGCGGCGAAAAATCGAACGGAATCGAGAGCGACCGAATTTATCAAGCTAAGGTCACTCCGAAAATGAAAATTCCATCGAATAAAGTTTACACCGAAGTTGAAGGAATCCCAAGCGTTGATCTCCAAGAAATTCGTTTTCAAATGGCCAGCGAGAGGGATCATGAGGGAAATATAAATGTGCAGGGTGCAGGGAAGACAGCAATGCTATCAAAATATTTGAATATGAGTAGAACCGAGACTGAGACAGAAGACAAACATTTTTACGAATTAATAATCAATAATAAATGCAACGCTTTCGAGAGCGTGAGCACTGAAAAAAATAAAGAAGAGTTTTTCTCAGAAATCGACCAGAATGATAGTGGAAATTTGGGAAACGGGAATACGAGATTTGGAACGACGAGCGAATTTCACGAATATTCACCAAACGTGGAGAGTTTTCGAGAGATGGAAAAATCTCCGGATCCGGAAAATACGCCAATGGTTCGTCTCGTTCAGAATGAAGATGGCGAGCAATTTTTTGAGCTCGTGCGAGAACCTTTGGAGTACGAGAAAAATCGAGGAATCGATAGAAATACGGAAACTTTATCGGTTTCCGGTTTAATTGAAGAAAATACAAGAAACTCAAGAGCTCCAAATGCAACTAATTCAAATTCTGGAAACAGGAAGGAAAAGAAAGAAATTTTCATAGAGAATGGGCCAAAAGTTGTGAAGGATCGTACTCGTAAATTTAAATGCAACGAATGCGACAAATGGTTTTCAACTGCTTATAATTTTAAACAACACGCAGGGACTCATTTCTTCGACCAACAGAAATACAGATGCGAATATTGCGGCGTTTCCTTCGCTTGGAAATCTACTCTTAATAAACATTTGGCTGGAAATCATCGTCCCGACGGACCACAAAAATTTGTTTGTGAAATTTGTCCGAAGGTCTACAGTACGCTCTCACAGGTTAACGAGCACGTGAAAAGAGATCATTTGAAGGAACGAAATCACGTGTGCACATTGTGTGGAAAATCATTTTTTAAGAAATTTGATTTGAAAACACATAGTCGAATACACACGAAAGAGCGACCGTACATTTGTCGGGCTTGTGGCAAAGGTTTTCATCATCAGAGTCATATTATACGCCACGAGCGTATACATTCGGGCGAACGCCCTTACGAGTGTCAAATTTGTCAAAAAACTTTTACCCAACCAAGTTCGTTGAAATCTCATCGACAGAGGCATCGAGAAGTCAGGATAGACATTTTGGAGTATCGAATGGACGAAGATGATCCTCTTACGTCGGCTGTGCAATAG
- Protein Sequence
- MNSINKDSEPCSLTPSKKIGSRRCSVCDKEFQNEKSYFGHLRIHSNQGNSSCNGCTGSRNFIEPISQLKSDEISWFSLTKPFKCAVCENVFDRASQLDYHRRSVHLGEKSQICQICGKGFFRKNDLQTHLNVHLGTNQLICEICGRKFNHVSNLIRHCRTHAGSKPYPCTICGKRFTQISSLSRHKNIHGRKLSEEKQKKKTGIILTCGASMEERKIMKRQHYCCVCGETFEFMILLRQHKRIHAKIPEKMSIENFCNRQDEKLIYHDNTVENSMENFMELDKMNSIEVERDVSILDILSPYNCNDIELSNEENLEDKLYGNNSSGREVEKHYDIAQCLEHSDLSSSHVSQLVDSMNQKCRAQIDKCGEKSNGIESDRIYQAKVTPKMKIPSNKVYTEVEGIPSVDLQEIRFQMASERDHEGNINVQGAGKTAMLSKYLNMSRTETETEDKHFYELIINNKCNAFESVSTEKNKEEFFSEIDQNDSGNLGNGNTRFGTTSEFHEYSPNVESFREMEKSPDPENTPMVRLVQNEDGEQFFELVREPLEYEKNRGIDRNTETLSVSGLIEENTRNSRAPNATNSNSGNRKEKKEIFIENGPKVVKDRTRKFKCNECDKWFSTAYNFKQHAGTHFFDQQKYRCEYCGVSFAWKSTLNKHLAGNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKERNHVCTLCGKSFFKKFDLKTHSRIHTKERPYICRACGKGFHHQSHIIRHERIHSGERPYECQICQKTFTQPSSLKSHRQRHREVRIDILEYRMDEDDPLTSAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -