Vcan000971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venturia canescens
Gene Symbol
SCAND3
Assembly
None
Location
scaffold:223728-226244[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.9e-05 0.0022 18.6 6.1 1 23 326 348 326 348 0.99
2 15 0.00012 0.014 16.1 3.2 1 23 355 378 355 378 0.96
3 15 7.4e-05 0.0085 16.8 1.3 2 23 465 486 464 486 0.97
4 15 2.7e-06 0.00031 21.3 1.8 1 23 492 514 492 514 0.98
5 15 0.00065 0.075 13.8 1.0 1 23 520 542 520 542 0.98
6 15 2.6e-06 0.00029 21.4 0.9 1 23 557 579 557 579 0.98
7 15 1.4e-06 0.00016 22.2 1.0 1 23 585 607 585 607 0.97
8 15 4.6e-06 0.00053 20.6 1.5 1 23 613 635 613 635 0.98
9 15 0.001 0.12 13.1 0.4 1 23 641 663 641 663 0.99
10 15 1.5e-05 0.0017 19.0 0.3 1 23 669 692 669 692 0.92
11 15 1.5e-05 0.0017 19.0 1.3 1 23 698 720 698 720 0.98
12 15 0.00032 0.037 14.8 4.7 1 23 726 748 726 748 0.98
13 15 6.2e-05 0.0072 17.0 0.4 1 23 754 777 754 777 0.96
14 15 8.5e-06 0.00098 19.7 0.8 1 23 783 805 783 805 0.96
15 15 2.9e-06 0.00033 21.2 4.5 1 23 811 833 811 833 0.99

Sequence Information

Coding Sequence
ATGAATGCAGCGACGTCTGTGACCAACCAATGGATTCCTCCCAGGATTTATCTGGAGCCAGAGTTGCCCATTATGCCAGATGTACCGTTCGTCTCTCCGAAGGAAGAAAATTATTATGCAAAGTCTCTGAAACATAAACATTCCAAAATGGAAGAGATAAGCGAGCGTAGATATTCTGCCAAAATAAGTTTAGAGGATGAAAAAACTGAGACACCTGTGAACCAAGTGTCTTTGTCTCAACCACCAGTGAGAATAAATCACAGAGCTCAAATAGATGTGATAGACATTGAAGAAGGAGAAACAAACGATCGGAAGCGTGTATTGATTTATGAAGAGCAACAAACGAAATTGGTAATTTTGAAAGCTCTGGAAAGTGGCGAAGTTAGAGAAGTAGCGAATCAGCTAGTGGAAATTGTGACAATGATTGGAGCACCGCGAATAATTCAGAGTGGACAAGGCCGTGATTATGCGGAGCAAGTTGTACGAGAAATTAGATTGTTGCTTCGAGACTTTTGTGTTGTACACGGAGATACCTCGAAAAAAACCGAAGAACGCCGAAATTTTCGGTTTATCCTGAACACCTGGATGAAGAATCATCCAGGTAGAACCTTGAACGAAGCCCTTAGAATTGTCCAAGTGATCGAGAACACAACGACGAATTCGCGTCACGGCACAATTCCCAGCCAACTGTTTTTTGGCAGAAACACCTGCGAGGATCTTCGAAGAACAATTGGCATCAAAGGACCGCAAGAAAACTCTTGTCAGAAAACAAATTCTCAGCTAAAGGAACAAAATGTACTCGACTATGGTACTGAGAAATCAATAACTGAAATAAGGAACAAAAAGTCTTCGGAACCGAATTTAGATTTAACGACATTTGGCAATGTCGTCGACAATGTAAACATCTCATTGATCGCTCAAGAAAATACGAATGACTTTTCAAAAAAAAAAGATCTCGGAGAAGCGAACAATTTTTTTAAATGTGTAATATGTCACAAAAATTACACAAAATTGGGACATTTGAGAAACCATATGAAAACACACGACCAACGTACGAGCAATTTTGATTGTACGATATGCCACCAGTCATTTCGATCGTCCAGTGTTTACAACATCCATATGAAAAATTTTCACGAGCAGAAGTTGACAAAAAATGAGGATGAAGAACAACATTATCGTTTGGAGTCTAATGCTAAAAACGAAAATTCAAAAAGCCGGGTGAAAAAAATTGGTTTGATTAGCGAAGAATCGAAAGAGCGAATAAAGAACAAGACCAACCGAAAAAGAGTCGCTTTGAGAAATTTAGCAAAAAAACCCCGAAAAAAAATAGAACCTCGAAAAAAGGGGATAAAGAGCGAAAGAACGAACAAATTGAACGACAACTCTCTCCTAGAATGTAAATTCTGCAAGCAAACCTTCAACTTTCCGAGCGTTCTGCAGAGACACGTGCGATCTCACACGAACGAAAGGCCTTACGTTTGCGAAATATGCAACAAAAGTTTCAAACAATTAGGACACCTGAGTCAACACTCGTTGACTCACACGGACTATCGATCATTTCGATGCACGACATGCTCGATCAAGTTCGATTCTCTCGAAGCTTTGAAGCTTCATACAAATTCACATAAAGAAGAAACGATGTGTCGCTCGAAAAAAGTTTATCGTCTGTTCGAGTGCGATATTTGCAAAAAAGTATTTACCACCAAGAGTATACTGGAGCGTCACATATTCACTCACACGCATGAGCGCAAATTTGCTTGCAAAATATGCGGCAGAAGATTCAAGCAAGCTGGTCACGTGAAATCGCATATGCTCGTGCATACGGGCGAGCGAAATTTCGAGTGCGACATTTGTACGAAACGTTTCAGTCTCTCGAATTCGTTGAAGAAACACATGTACGTTCATAACGGCGATAAGCCTTACCAATGTGATATCTGCGGTTCGAGATTCCTTGAAAAACGTAATCTCAATGGTCATCTTATGACGCACACCAACGAGAAACCGTTTTCGTGCAAAATATGTGGTAAGCGGTACACTTTGGCTGACACTCTTCGACGTCACGTAAGCGCAGCTCACGAAGACGGTCGGACTTACCAGTGCGAAATTTGTGCCAAAATGTTCAAGCAACTCGCACATTTGTCTGTGCACAAAAAAGTTCACAATGACGAGCGTCCTTTCCAATGTCATTTGTGCGAGAAAAATTTTAAACACAAAAACGTTCTGAAATCACATCTCGCGATACACGCCAATGTTAGACCCTTCGAATGTGACGCTTGCAAAGCAACTTTCGTCAGAAAAACTAATTTGCAAACCCACATTACTTCGGCACACATGAACGAACGACCATACGCTTGTACCATTTGTAACAAGCGCTTCAAACAAATCAGTCATCTCAATGGACATATTGTCGTTCACAGCAATTCAATGCCCTATCAATGCGATTTCTGTGATCGCCGCTGCAACAGACTCGATAATCTTAAGAAACACATGAGACTGCACACAAAAAACGTGACGTGA
Protein Sequence
MNAATSVTNQWIPPRIYLEPELPIMPDVPFVSPKEENYYAKSLKHKHSKMEEISERRYSAKISLEDEKTETPVNQVSLSQPPVRINHRAQIDVIDIEEGETNDRKRVLIYEEQQTKLVILKALESGEVREVANQLVEIVTMIGAPRIIQSGQGRDYAEQVVREIRLLLRDFCVVHGDTSKKTEERRNFRFILNTWMKNHPGRTLNEALRIVQVIENTTTNSRHGTIPSQLFFGRNTCEDLRRTIGIKGPQENSCQKTNSQLKEQNVLDYGTEKSITEIRNKKSSEPNLDLTTFGNVVDNVNISLIAQENTNDFSKKKDLGEANNFFKCVICHKNYTKLGHLRNHMKTHDQRTSNFDCTICHQSFRSSSVYNIHMKNFHEQKLTKNEDEEQHYRLESNAKNENSKSRVKKIGLISEESKERIKNKTNRKRVALRNLAKKPRKKIEPRKKGIKSERTNKLNDNSLLECKFCKQTFNFPSVLQRHVRSHTNERPYVCEICNKSFKQLGHLSQHSLTHTDYRSFRCTTCSIKFDSLEALKLHTNSHKEETMCRSKKVYRLFECDICKKVFTTKSILERHIFTHTHERKFACKICGRRFKQAGHVKSHMLVHTGERNFECDICTKRFSLSNSLKKHMYVHNGDKPYQCDICGSRFLEKRNLNGHLMTHTNEKPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDACKATFVRKTNLQTHITSAHMNERPYACTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00266638; iTF_01299463; iTF_00265913;
90% Identity
-
80% Identity
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