Vcan005885.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:208405-211520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00027 0.031 15.0 0.5 1 23 168 190 168 190 0.97 2 18 3.7e-06 0.00043 20.9 3.9 1 23 196 218 196 218 0.98 3 18 8.1 9.3e+02 0.9 1.7 1 23 223 246 223 246 0.86 4 18 4.1e-05 0.0048 17.6 2.7 1 23 252 274 252 274 0.97 5 18 0.00021 0.024 15.3 0.8 1 23 280 303 280 303 0.96 6 18 0.00021 0.024 15.4 3.9 1 23 314 336 314 336 0.98 7 18 1.4e-05 0.0016 19.0 0.9 1 23 340 362 340 362 0.98 8 18 6.8e-07 7.8e-05 23.2 0.9 1 23 368 390 368 390 0.98 9 18 7.6e-06 0.00088 19.9 1.9 1 23 396 418 396 418 0.98 10 18 0.00028 0.032 14.9 0.8 1 23 594 616 594 616 0.97 11 18 0.0003 0.034 14.9 4.6 1 23 622 644 622 644 0.95 12 18 0.0028 0.32 11.8 0.3 1 23 649 672 649 672 0.97 13 18 8.8e-05 0.01 16.5 4.1 1 23 678 700 678 700 0.98 14 18 0.00019 0.022 15.5 0.2 1 23 706 729 706 729 0.97 15 18 0.001 0.12 13.2 0.7 1 23 740 762 740 762 0.96 16 18 6.4e-06 0.00073 20.1 1.5 1 23 766 788 766 788 0.95 17 18 3.8e-05 0.0043 17.7 0.3 1 23 794 816 794 816 0.98 18 18 1.3e-05 0.0015 19.1 1.4 1 23 822 844 822 844 0.98
Sequence Information
- Coding Sequence
- ATGGTTTTTAGGTCCTTCGAACGAGATCTGCTAGGGCCTACTTTTGCGAAGATAAGAGTAAAGAAGGACGTTTTTCAAAGGCCGATGGTGCATGCGGCGATGTTGAGAGCTCCGAAGACCGAAGACGCGCAAATTTTTGATGTGTCACGTCGGAGAACGGAGGTAAACAGTCGAGCCAAGCAAAATAAGTCAACGAAAAATACTACAGAAAAAAAGGCAATACAACAACCGGCCATAGCTCCGAGGTCGAAACTGGTATCGTCAACGAAGAAAAAAACAACGAAGAGCAATGGGAAGATTGAAAATAAGGAGGAACAAGCCGAGAAGCCTGATTCAGCGAAGCCAAAAGAACGAAACGTTGGGACCAAGATCAAAACGGAGTTTTCTACGAGTGTGGAAATTCTGGAAGATCATGGAGACCACAGTGATGATTTCCGACTTGGAAACCCGTTGGAAAATATTGAGCTCGATAAAACGGATAAACGTAAGGAAAAAGTGAAATTCGAGTGCAATACGTGTGGCAGGACGTTCGTTATAAAATCTCGATACATGGCGCACGTCATCAAGCACAGCGTTGTTAAGGCTTTTGTGTGTGACCTGTGTAATAAAACGTTCAAGAGGAAATGTGCCCTCAAGGCTCACCGTAGACTTCACAAAGGCATAAGATACATTTGTGACTATTGTAAAGCGAGTAAATCAAGCAAAATGGCTGTGAGATGTCACATCAGAAGAGTGCACCTCCGAGAGCATCCTTTCACTTGCGAGCAGTGTGGAAAGCGTTTCATGACCAACTGCGATCTCAAAGATCACATAACCCTTCACCTCGGTGTTAAATCTTTTATCTGCGAAAGTTGCGGTAAAGGTTTCATGCGACAATCCGCTTTGGGTCATCACAATCGACGAGTGCATGGTATAATTAAAAAAGTTCTGACTAAAATTCACAAGTGCAAAAGTTGCGATAAAAGTTGCTCGTCCGAGTACGCGTTACGCGTCCACGTCGAAACTCATACGAGGAAATACTACTGTGCCGAGTGTGACAAAGAATTCGTTAACAACACGAGTTTACAATTGCACAATCGTAAACACACCGGTGAACGTCCCTTCCAGTGTGACCAGTGTCCCAAAAGTTTCACGCGTTCGAGTGCCTTTATAGTTCACAAACTAACTCACACCGGTGCCAGACCCTTTGTTTGTGATATATGTGGCAAAAGTTATACCCAACGAACTACCATGATGTCTCACAGAAAAAAACATCCTGGCAATCATCCAAGACCGCCACCAATTTCCCTGCTCAAACTCGTCAAGGATACTCGACAGTACATTGCACCGGACCCTCTGGGGCCAGATTTTCTCACGGTAAAGATAATGGACGATATCTTTCGAATACCAAAATCTCTGTGCTACTTCATGGTGAAAGAACCGCTGAATCGAGGAGACGAAGCGGTGTTGGCCGAAAAATTGAAGAGTAGAGAAAATGAGGCGGAAAGCGAGGAAAGCGGGTCGAGGAAATCGATTGAGGAAGGATCGAAAGAAAGGCTGATGGTGAGAGCTGAAAAAGAAAACAAAGTGGAGGCAGAAAGAGAAAATCAGAGAGTGAGGAAACACACTGCGATGCCCGTGGTCGCAGAATCATCGAGTAAAAGTGGAAAAGCGACGAATCAAAGATTAGTGGAGAAAAATTGTAGAGTACTCGACGCCGTTCGTCCGGCCGCTTGCAACAGCGAACCACGGAAGACAAAGGCCGAAAGGAAGGGCGAGAAGATACGAGAGTCCGTGACTTACGAGTGTGAAACTTGTAGCCTGAAATTTGCTCGAAAGAGGGAATACACGATTCACATGGTGAATCACAGTACTCTGAGGTCGCACAAGTGCGACATTTGCGAGAAAGCGTTCAAAAGAAAATCGGAGCTGAAGTGTCACGTTCAGCTTCATAGTGGTATAAAATACAATTGTGACGAGTGCGATTTCGTGACAACGAGTAAAGTAGCTGTTAGATACCACGTGAGGCGAGTACACCAGCGTGATTTTCGTTACAAGTGCGAACAGTGCGACAAATCTTTCATGTCGAACTGCGAGCTCAAGGATCACCGGACCAGTCATTCGAGCACTAAAAGTTTCATTTGCGAGATATGTGGAAAGGCTTATCTACAAAAGTCTTACCTCGGTGCTCACAAGCGTACGGTACACGGTCTTGTACAAAGAATTTTGACGAAAGATCATCGCTGCAGCATCTGCAACAAAAATTTCGTCTCGGAGTACATTCTTCAAAATCACATCGGCATTCACTCCCGCAAATTCTTGTGTCCTCATTGCGGCAAAGAATTCGCCAACAATCAGTCTCTCACCATGCACAACCGTATGCACACCGGTGAACGTCCTTATTCCTGCAGAATGTGCTCAAAATCTTTCGTAAGATCGAACGCTCTCGCTGTCCACGAGCTGACCCACAGTGGAAAAAGACCCTACGTTTGTGATCTGTGCGGCAAAAACTTTACACAGCGGAGCACGATGATGGGACACAGAAAGAAACATCCGGGCACGCATCCTCCACCGCCACCTACGCTTTTGAGCAAACTCGAGGGTTCCATCGGTTCTAATTCTTGA
- Protein Sequence
- MVFRSFERDLLGPTFAKIRVKKDVFQRPMVHAAMLRAPKTEDAQIFDVSRRRTEVNSRAKQNKSTKNTTEKKAIQQPAIAPRSKLVSSTKKKTTKSNGKIENKEEQAEKPDSAKPKERNVGTKIKTEFSTSVEILEDHGDHSDDFRLGNPLENIELDKTDKRKEKVKFECNTCGRTFVIKSRYMAHVIKHSVVKAFVCDLCNKTFKRKCALKAHRRLHKGIRYICDYCKASKSSKMAVRCHIRRVHLREHPFTCEQCGKRFMTNCDLKDHITLHLGVKSFICESCGKGFMRQSALGHHNRRVHGIIKKVLTKIHKCKSCDKSCSSEYALRVHVETHTRKYYCAECDKEFVNNTSLQLHNRKHTGERPFQCDQCPKSFTRSSAFIVHKLTHTGARPFVCDICGKSYTQRTTMMSHRKKHPGNHPRPPPISLLKLVKDTRQYIAPDPLGPDFLTVKIMDDIFRIPKSLCYFMVKEPLNRGDEAVLAEKLKSRENEAESEESGSRKSIEEGSKERLMVRAEKENKVEAERENQRVRKHTAMPVVAESSSKSGKATNQRLVEKNCRVLDAVRPAACNSEPRKTKAERKGEKIRESVTYECETCSLKFARKREYTIHMVNHSTLRSHKCDICEKAFKRKSELKCHVQLHSGIKYNCDECDFVTTSKVAVRYHVRRVHQRDFRYKCEQCDKSFMSNCELKDHRTSHSSTKSFICEICGKAYLQKSYLGAHKRTVHGLVQRILTKDHRCSICNKNFVSEYILQNHIGIHSRKFLCPHCGKEFANNQSLTMHNRMHTGERPYSCRMCSKSFVRSNALAVHELTHSGKRPYVCDLCGKNFTQRSTMMGHRKKHPGTHPPPPPTLLSKLEGSIGSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -