Vcan010688.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- lola
- Assembly
- None
- Location
- scaffold:74023-86734[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-16 4.9e-13 48.8 0.0 2 42 419 460 418 474 0.96 2 2 4.8 7.5e+03 -3.0 0.0 25 34 547 556 546 562 0.82
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAATTCTGTTTACGATGGAACAATCATCAGCCAAATTTCATATCCGTCTTCTCGTCGCTGCTGAACAATGAGACTCTGGTGGACGTTACTCTGGCCGCCGAGGGTCGCCACCTTCAAGCTCACAAAGTCGTACTTTCGGCGTGCAGCACATACTTTCAGTCCCTCTTCACCGTCAATCCCTGTCAGCATCCTATCGTCATTCTCAAAGATGTCAAATTCTCCGATCTCAAGATCATGGTTGATTTCATGTATTACGGCGAAGTCAATGTTTCCCAGGATCAATTGCCCTCGATAATCAAGACTGCAGAAAGTTTGAAGATCAAGGGCCTCGCGGAGATGCACACAGCTTCTCTGACAAAGTGGCAGAGTGAAACCGGTGGTGTCGATCGTGGAGAGTCCTGTTCTCCGAGTCCTTCCCCCTTGTCGCCCTCTTTCCGTAGGAAACGTTTGCGCAAAGGATCGACCGGTTCGACTTCCGGAGGATCCGCCGACAAGACCGAAGAGATCAACGAGATCACATTAGTCGCTACGAATATCGTTAAACCTGAACCTCACATCGTGCCCCAAGAGGCTAGCGAACATCTCAGACGTCCGATCAACGCTACGACCGACACGCAAGGCAGTATCGACGAGGATCAAATATCAATAATGAGCAACATGGAAAGCAGCACAACGACGACACCGGCTCAGAGCGAAGGTTCTTTGCAAGAAGTCGGCCACCAAAGTGGTAACGTCGGTCACGGTTCCGTGTCTTCTCATCCTCCGGCTCACCAAGGATTGCAATGGACAATAATGGAGCACACGTATCCGCGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGGTCCAAGCCTCGTCGGCGTTTACGACACCCGAAATATCAGCGACATCGAGCATCAGCGAGCATCAATATCAATCGGGTGGTGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCAGCGGAAGTAGCGGGGGTACGGGTACGTCGACGCCCGGGGGGCCGATTTGTGCGTTGACCAATTATCCGGATTCACCGAGCCATGGTTCGATGCAGCAGCAACAGCAGCAACATTCGTCGAATTCGGGAGGAGGAATCGGAGGTAGCGGCGGTGGGAACGGCGGCCAGGGTAGCGCCGGTGGACAATCCCCAGGACCCACTCAATGCCCGAGCAATTGTCAAAGTCCTTGCGCGAGTCCGCAGGCTACGATCAAGAGGAAAAGATCGACCAATCCTCAAGCGGATGAAAACTTCATTCGGGCACTCGAAGCGGTTCGTTACGGTGGTATCGGCTTTTGTAAAGCCGCTCGAATGTTCGGCGTTAACAATCGTACCTTGTGGCTCGAGTACAAAAAACGTGGATATCCGAACAATCGTCCCAGCTTGAAATCCCGTGTCAAACAAGAAACAGCCTCGTCGCCACCCCCACCGCCAGCTACTTCTTCACAAACCGTCAATTCCCAAAGTCCAACCCCGATGGGACCACCAACGACGCCTCACACGACACACAATACACATCCGACGCACACGATGCTCACAGCTCATAGCCCGCACGCCATGCTCTCCGGATACATCGACAGCAGGCACACCGATTATACATTACCAAGCTCCACCATGCCCATTAATTTACACGGTGTCAATTACAATTCTATAAGGAAGGGTGGGAAGGGAGGGAATAGAGCGAATTACAAGAACGAAAGAAAGGAAATAACCGAATTGGACGTTTTACCAGGACATCAGCAAAAACAAATTGGAACGAAACACGGTCGTCTGTTGATGAGACAACCGCGCGTGAAAAAAGAATCGGAACCCGGTCAACGTGGATCGCCCGAGAGCGAACCTGGCTCGCCCCGCATTGGAGCATCCGCATCAACCGCTTGGTCCTCCTCATCCTCCGCATCGTCACCGCATATAACAGCACCGAACGTTAAATTGACGAGCAGCTCTCGGGAACAGAGCTGGGACGACAGCGTCGATACAAGTGGCGCAACGACAACGAGCAACGCCGCTGCTCCTGCTCCCACGAATCTCTTGACCGTACCACAACCTTCGTATCTCGTAAAACAACACTCTCATCCCCTATTACCCAGTCAACAAGCGGCACCGAGCTCATCCAATTATTGGATCCAGCGTCAACACTCCAATCCCGAATATCCTGGAGGTAGAACTTGCTCCAGCCCAAAAAGCACCGACCCCATACCGCTCATTAAAATCGACGAGGGTACGCCGGTGACGACCTCCTCAGCGACGCGCCAGGACCTCACCGCCAAGTGCCAAATATCGACGAGCAGAGAATCCGCTCCCACGGTCCCGAGCAATTCCGGTGGTGGAGGTGGAATTAGGCTCGTTCCTGCTGAATTGTTGAGAAGCTCCTCCGCCCCTCAGACGAGTAGTACAAATCCGCATACGTCCGCGTCGGAAAATCGAACACTATCGCGCGAAGGCTCGAGCGATCAACGCGGTCACTGTCCCGTTCAGCGACCCGGACCCGCCCTGGGATGCAACCATTGTTGGAACACGATCGACACCCATGGACGTATATTACGGAGAAAAACAAAATATCATTGTCCCGAGTGTCAGATTAATTTGTGCATAGTTCCCTGTTTTCAAGAATTTCACGAACGACCACGAGAAATATCACCTTTGAGGCCGCTACCAAAAACTAGTTCTATCTAA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWQSETGGVDRGESCSPSPSPLSPSFRRKRLRKGSTGSTSGGSADKTEEINEITLVATNIVKPEPHIVPQEASEHLRRPINATTDTQGSIDEDQISIMSNMESSTTTTPAQSEGSLQEVGHQSGNVGHGSVSSHPPAHQGLQWTIMEHTYPRFALSSCQTNLSVQASSAFTTPEISATSSISEHQYQSGGGGGGGGGGGGGSGSSGGTGTSTPGGPICALTNYPDSPSHGSMQQQQQQHSSNSGGGIGGSGGGNGGQGSAGGQSPGPTQCPSNCQSPCASPQATIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQETASSPPPPPATSSQTVNSQSPTPMGPPTTPHTTHNTHPTHTMLTAHSPHAMLSGYIDSRHTDYTLPSSTMPINLHGVNYNSIRKGGKGGNRANYKNERKEITELDVLPGHQQKQIGTKHGRLLMRQPRVKKESEPGQRGSPESEPGSPRIGASASTAWSSSSSASSPHITAPNVKLTSSSREQSWDDSVDTSGATTTSNAAAPAPTNLLTVPQPSYLVKQHSHPLLPSQQAAPSSSNYWIQRQHSNPEYPGGRTCSSPKSTDPIPLIKIDEGTPVTTSSATRQDLTAKCQISTSRESAPTVPSNSGGGGGIRLVPAELLRSSSAPQTSSTNPHTSASENRTLSREGSSDQRGHCPVQRPGPALGCNHCWNTIDTHGRILRRKTKYHCPECQINLCIVPCFQEFHERPREISPLRPLPKTSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01508977;
- 90% Identity
- iTF_01508977;
- 80% Identity
- iTF_01508977;