Vtam016127.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073299.1:5142498-5149676[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1e-05 0.00073 20.3 1.3 1 23 261 283 261 283 0.99 2 13 0.082 6 8.0 2.1 1 23 291 314 291 314 0.93 3 13 2.1 1.6e+02 3.5 0.5 1 23 318 341 318 341 0.85 4 13 0.00047 0.034 15.0 2.4 1 23 413 435 413 435 0.99 5 13 2.8 2.1e+02 3.1 1.9 2 23 444 466 443 466 0.95 6 13 0.18 13 6.9 3.0 1 23 470 492 470 492 0.98 7 13 9.2e-05 0.0067 17.3 2.8 1 23 497 520 497 520 0.98 8 13 0.27 20 6.3 1.0 3 22 526 545 525 547 0.79 9 13 0.13 9.8 7.3 0.0 2 19 566 583 565 586 0.92 10 13 7.9 5.8e+02 1.7 0.2 2 20 624 642 623 646 0.73 11 13 1.1e-06 7.9e-05 23.3 1.4 1 23 655 677 655 677 0.98 12 13 0.00036 0.027 15.4 0.7 1 23 683 705 683 705 0.96 13 13 4.7e-06 0.00035 21.3 2.6 1 23 711 734 711 734 0.98
Sequence Information
- Coding Sequence
- ATGTTTGATTTAAAAGCTTGCACAGTGTGCTTGAAGAGTGATGTTAAAATCTTCAGTATGAACATAGATCAATTAagaaacgaatataatttaGCATCAGGTTTAAAGACCCATAGTCATAATGGCTTACCggaatatttatgttatcagTGTGTTGCCTATGTTAGAAATTTCAAGAAATTTCGTGATAAATGCCAACGCACGTATTATGCATTGCAAgaaattttgtatagaaataaaGAGATCACCAAGTCAATAATTGCAGAATTAGAtagtaatgtattaaatattaaaccatCACTGTCATATCTCGCTCCAGACCATCTCAGGACGGGTTATGAAAGACTTAAATTCAAATGGGTAAATCAGAATAGAATTGGTATAAAACATCAAGATAATATACCTGTTGTACAATATACAACAACATCCGATGATTTTAGTTTTGAAGTGCCTGTAAACAATCAAAAACTCTTAACAGAATTGTTAGATGTATGTGTTAAACAAGAAGACAATGCAATACCACACTATGAGGAGCCATTTGCACCCGACAATATAGAATTAGAGTCTGAAAAAAATGATGAAAGTTTCTTTGATAACAATTTTGATGAATGTGATGGGGAAGataatgtttatgaaaataatgatgAACAACCTAAAGTAGTTGAACAAACTGATGTAGATGGTATGAATTTAGAGGAGGAGTATGCAACAATGGTACCCATATCAAAGAAGGAGGCTAAGGCTGTTGTTGATGTGTACAAAATGTTCGCACACGGCAAGTATCAGTGTAAAGTGTGTAAGAAagcatattataatgaaaatcgtCTGACAGCACACATGAGAATGCACGATAAGCACACAAGTGGAACATTCTTCTGTGCACTGTGCAGTTATTATTACAGAACTGAATTTCTTCTAAAAACCCATATGACtgaaaaacatatgtataaatatttatgtaaaaagtgTCCTGAAGTTAGTTTTGACAGGACATCAgcaaaacaacattttatctGGAGTCACTTACAAAAAGGTTCAAAGAAAGACGCTAGCTGGTGTGAGACCCAACCGTCAGGTGTTTCCAAAGATAGTAAAAAGAACAAATTGTTTATACGTCctataagaaatacaaaaaaactcCCGCAAGATTTTCCCATTTACTCTCCAATAAGTCAAGAAGAACAATATGCTTTAGTGAAGGACCGACAGAAGACGAAAAACTATATTGATTCACCATACAAGTgcgaattttgttttaaaggcTTTAGAGAAGTTGCGACATTTGAAAAGCATATGAAGAAACATGATCCAATATGTTCCGGAAAACTCCAATGTGATGCATGCAAAATATATTGTCCGGACACAAGGAAGATGTACAAACATATGAATATGAGCCATTTGTTTAAGTATTCTTGTCAAATGTGCAGCTATGTGTGTTTTAGCagaggTCAAGCTAAAATGCACTATCGATGGCACAAAAACGTAACATACTCGTGTCCTCATTGTAAAAAAGAATTTtctaaagcaTCGACAAGACTGACTCACATACGTATAAAGCACCCATCAATGAACATCTGCAATTTGTGTGGCCGTAGCTTTGTGAGCGTCACCGGCCTGTACTGTCACAAGAAACTAGCGCACAGTAAAGAGGAAGTAGAGGAGACCACAGGTGAAGCAGATACATCCCACCCTCTGTACTGTGCGGAGTGTGGGATTCAGTTCCGAGACGAGACCGCCTTCGCGACGCACTTCGGCTCCTCCAATAAGCACGCCGATACCAATCTCTCTATCAAGCCGGTGggggggcggcgcgggcggccgCGCGCGGCGCACAGCGGCGTCGTCAACACCGGCGTGCCCACCTCCTCCACCTGCGAGATTTGTAACAAGTACCTCTTGAACGACTCACAAGCGCGGCGGCACTACGACGCGGAGCACCCCGGCGCGCACTACCTCAAGCGCTACATGTGCGACATCTGCGGACACACCACCCGGCAATACGCAAATCTGACGGTACATATGCGTACGCACACATTGGAGAAGCCTTACGCGTGTCCGCATTGCGAGCGACGCTTCAGCATGCCGAGCAACAGAGATAGGCATCTAGTTGTGCACACGGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTGAAGCTGCACATCCAGACGGTGCACCTGAAGATCCCGTACGCGCCGTGGGACAAGAAGAACCGCAAGCGGCGCCGCGAGCCCGagccgcccgcgccccccgcgccgcccgcgccgcccgccgggAACTACCTCAGCGCCTACATCACCTACAGCGAGTGA
- Protein Sequence
- MFDLKACTVCLKSDVKIFSMNIDQLRNEYNLASGLKTHSHNGLPEYLCYQCVAYVRNFKKFRDKCQRTYYALQEILYRNKEITKSIIAELDSNVLNIKPSLSYLAPDHLRTGYERLKFKWVNQNRIGIKHQDNIPVVQYTTTSDDFSFEVPVNNQKLLTELLDVCVKQEDNAIPHYEEPFAPDNIELESEKNDESFFDNNFDECDGEDNVYENNDEQPKVVEQTDVDGMNLEEEYATMVPISKKEAKAVVDVYKMFAHGKYQCKVCKKAYYNENRLTAHMRMHDKHTSGTFFCALCSYYYRTEFLLKTHMTEKHMYKYLCKKCPEVSFDRTSAKQHFIWSHLQKGSKKDASWCETQPSGVSKDSKKNKLFIRPIRNTKKLPQDFPIYSPISQEEQYALVKDRQKTKNYIDSPYKCEFCFKGFREVATFEKHMKKHDPICSGKLQCDACKIYCPDTRKMYKHMNMSHLFKYSCQMCSYVCFSRGQAKMHYRWHKNVTYSCPHCKKEFSKASTRLTHIRIKHPSMNICNLCGRSFVSVTGLYCHKKLAHSKEEVEETTGEADTSHPLYCAECGIQFRDETAFATHFGSSNKHADTNLSIKPVGGRRGRPRAAHSGVVNTGVPTSSTCEICNKYLLNDSQARRHYDAEHPGAHYLKRYMCDICGHTTRQYANLTVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRREPEPPAPPAPPAPPAGNYLSAYITYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079322;
- 90% Identity
- iTF_01080164;
- 80% Identity
- -