Vtam017492.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073302.1:7233013-7242837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0025 0.18 12.8 0.3 1 23 537 559 537 559 0.96 2 11 1.5e-05 0.0011 19.7 2.6 1 23 575 597 575 597 0.98 3 11 0.00025 0.018 15.9 1.5 1 23 603 625 603 625 0.98 4 11 1.9e-06 0.00014 22.6 2.2 1 23 632 654 632 654 0.99 5 11 2e-05 0.0015 19.3 0.1 1 23 660 682 660 682 0.93 6 11 2.5e-05 0.0018 19.0 0.0 1 23 688 710 688 710 0.98 7 11 5.5e-06 0.0004 21.1 1.9 1 23 716 739 716 739 0.96 8 11 0.0023 0.17 12.9 3.5 1 23 745 768 745 768 0.94 9 11 0.00012 0.009 16.9 2.1 2 23 775 796 774 796 0.97 10 11 2.2e-05 0.0016 19.2 1.5 1 23 802 824 802 824 0.97 11 11 0.003 0.22 12.5 0.1 1 23 830 854 830 854 0.94
Sequence Information
- Coding Sequence
- atgaATAACTCGTGTTTTATTTGCAACGCTCGGACAGGAGCATCTTTGAGGAATGCTTTAAACTTATTCGGGGATGATgtGTCACTCAGCTCCGGAAAGAAACTATCTGAAGTAATTGGGGATATTGTAGATAAATTGATCAAAGAAGATGTTGTCCATACACGAGTTATATGCAAGAAATGTCAAAAGGCAATCGTTGAATATGACTCTTTACAAGTCAGATTACAAGCTATTAAAACAGAACTACTTGAAAACTTCAAGAAAACTTTACCGAAACATAACTTAAGCTACGATACATATAATAAGGAGGtgaaaattgtaaatagttctAATATCAAGAAGAATGAAGTTAAAACGTTAGTGTTACCAGCTTCTAAACTGCAACCCTTGCCGCCTGATTTTGTGATAAAATCTGGGAAATGGCCAATATCCAAATCTAACATTGTTATACCTAAACTAAAGTCTGTCGTGACGATACCGGCGTCATCAACCCTAAATCTCAAAGTGACAGTCGGTTCGTCTGTTCTCACTCAGAGCATAATCACAAACACAATAGCCAACAAGAAATCAGCACTAGCGAATCAAACGATTGATccaaaattaattatgacaccAAAAGTAGAAAAAAACGATCAACCGTCAATTTCGACGAATGTAATGAACTTTGTCTCTAGTTCTATGAAATCCGACGAAATCTTGACTTCGTCGACTGTGACGTTTACTCAGCCGATATCGTCGAATACGTTAGTTTCGACGAAATCTAGTCCGATATTGAGTTTCAATGTCAATTCGTTACCGAAAGATTTCCTTTCGTCGGCGATTTTGACGAAAGTCGACGACTTCGATATTGAGAAACTAAAAAAGGAAGGTTCTATCGAAGTTAGTGAATTGGAACAAGCAGACGAACAGCCGATGGAAATTGATGAAGattgCTCTCTCACTGTGCTATCGACGAATGAATCGGACAATAAATTGATCTTCGATGAGACCGTTaagGATGATGAAGACAAATCGAAGTCTGAGTATCTAGACGTGCGGCTGCTCGGGGAGCAGGGCCGCTACGTGCTGGGCAAGCTGCAGGTGCTGCGCCCCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCGGAAGGGGACGTCGACACGGATGAGCATACAATTGTGATGGAAGGAGAGAATGGTTCGATCCTACGAGTGGTGTCCGGACAAAAATTTCTGTATGGAGACAATCAGATATCTCTCATGCTGCCTGGATTGCAGGATTCTGTCGATGGGCAAGaTTCGAATGATGAGTCCCAGATCGAGCTGCAAGTGTCAGGCGATGAAGAAACAGCCAATGCTATTATTGCGGCCGCGCAGGAACAAGgaGGTGCTTTCATAAAAGTCGAGTCGGGCGAGATGTATCGCGTCCAGTCAGTACAGAGCACGACAGAGGATGATGAAACTAGTAATGTTGATACTTCTATGGTAGTGCACGAAGACGGTCAGTTCCGGTGCTTGTTGTGTGAGAAGAATGAAACAAAAGAGCGGCGCGTGGTGGTGGGCGACGCGGAGGCGGCGATGCAGCACGTGAAGAGCGCGCACGGCGCGCGGCTGTACATCTGCCGCGTGTGCGGCCGCGCGCTGCGCCGCCGCGCGCACTACGCCGCGCACGTCGagCAACACGCGCAGAAAAACAAGGCCCTACAGAATACAGACAAGACGAAACTTCACGAGTGTAAcatatgtaagaaaaaatatagCTCCCGCACGCTGCTGACGGAGCACATGAACGTGCACAGCGGGTCGCGGCCGTACGCCTGCGACGTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGTCGCACCTCAAGACGCATCTCgttCGTCCGAGGCCGTATAAATGCGAACAGTGCGGGAAGTCATTCTTCACTTTACAAAATTTGAACCAGCATGAGAAAACGCATTCGGGTGTCAAAGACTTCATTTGTAATGTTTGCGGCAAAGCGTTCGGCACGCAGCATAACCTGGAGGTGCACGGCGTGGTGCACTCGGGCAGCAAGCCCTTCGTGTGCGGCGCCTGCGGGAAGGCCTTCGCGCGCCGCGCCGAGGTGCGCGACCACATGCGCATCCACACCGGCGAGCGGCCCTTCACGTGCGACGTGTGCGGCGCAAGCTTCACGCAGCGCTCCAACCTGCACTCGCACAAGCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCAGTGCCCCAAGCGGTTCAAACGGAGGAGACTGCTGGACTACCACGTCAAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGATCTGCCACGCCACGTTCGTGTACCCGGAGCACTACAAGAAGCACGCCCGCATCCACAGCGGCGAGAAGCCCTACACGTGCGAGGTGTGCGGGAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACCGCAAGCCCTACGAGTGCGTCGTGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTCTACCAGCACATGAACACCAGCGGTCACTTGGCCGAGTCGATTGTCGTCAACCAGCCGAGGGttacgaaaataaatgaaaatATGCTGACAACACAGGCAGTTGTTGTCGATACAGAGAAAAGTGACAAGTTTCCGGACACGATATACGAAACAACGGAAGAGTTACAACTCGAAGCAGACGATAAATCTATCGTTACGACGGACGAAAGCGGCACGAAGTTCTATATAACCGGAGACAAGAAGATACTTCTACAAGAAGgaaaaacaataaatatcgtCCAAGAATCCGAGGAACCAACTTTATTAACACTGCATAACATAGACAGCAGCCTGAAAGCGGACGGAACACTTATAGACACGATTCCTGCGGACCAGCTGACGGACCAACAGCAGGCCGGAGCCCTGCGACTGGTGTCCGTGTCGCTGCCGGACGGTTCCAGCGGCTGGGTCGCCATCAACAACTAG
- Protein Sequence
- MNNSCFICNARTGASLRNALNLFGDDVSLSSGKKLSEVIGDIVDKLIKEDVVHTRVICKKCQKAIVEYDSLQVRLQAIKTELLENFKKTLPKHNLSYDTYNKEVKIVNSSNIKKNEVKTLVLPASKLQPLPPDFVIKSGKWPISKSNIVIPKLKSVVTIPASSTLNLKVTVGSSVLTQSIITNTIANKKSALANQTIDPKLIMTPKVEKNDQPSISTNVMNFVSSSMKSDEILTSSTVTFTQPISSNTLVSTKSSPILSFNVNSLPKDFLSSAILTKVDDFDIEKLKKEGSIEVSELEQADEQPMEIDEDCSLTVLSTNESDNKLIFDETVKDDEDKSKSEYLDVRLLGEQGRYVLGKLQVLRPDADADADADADADADAEGDVDTDEHTIVMEGENGSILRVVSGQKFLYGDNQISLMLPGLQDSVDGQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVQSVQSTTEDDETSNVDTSMVVHEDGQFRCLLCEKNETKERRVVVGDAEAAMQHVKSAHGARLYICRVCGRALRRRAHYAAHVEQHAQKNKALQNTDKTKLHECNICKKKYSSRTLLTEHMNVHSGSRPYACDVCGKAFASKYTHQSHLKTHLVRPRPYKCEQCGKSFFTLQNLNQHEKTHSGVKDFICNVCGKAFGTQHNLEVHGVVHSGSKPFVCGACGKAFARRAEVRDHMRIHTGERPFTCDVCGASFTQRSNLHSHKRATHLDDKRYHCTQCPKRFKRRRLLDYHVKASHTGERPLKCEICHATFVYPEHYKKHARIHSGEKPYTCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGAGYMRKQLLYQHMNTSGHLAESIVVNQPRVTKINENMLTTQAVVVDTEKSDKFPDTIYETTEELQLEADDKSIVTTDESGTKFYITGDKKILLQEGKTINIVQESEEPTLLTLHNIDSSLKADGTLIDTIPADQLTDQQQAGALRLVSVSLPDGSSGWVAINN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079247;
- 90% Identity
- iTF_01080913;
- 80% Identity
- -