Vtam018787.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073305.1:262153-266533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9e-07 1.4e-05 25.7 1.2 1 23 90 112 90 112 0.97 2 10 0.00019 0.014 16.2 2.4 2 23 118 139 117 139 0.97 3 10 4.4e-09 3.2e-07 30.8 1.3 1 23 145 167 145 167 0.99 4 10 0.001 0.074 14.0 0.1 1 21 173 193 173 194 0.95 5 10 3.6e-05 0.0027 18.5 1.1 2 23 207 228 206 228 0.97 6 10 1.6e-05 0.0012 19.7 1.4 1 23 234 256 234 256 0.97 7 10 0.00035 0.025 15.4 2.8 1 23 262 284 262 284 0.98 8 10 7e-06 0.00051 20.8 5.4 1 23 290 312 290 312 0.98 9 10 2.4e-06 0.00017 22.3 0.9 2 23 319 340 318 340 0.97 10 10 2e-05 0.0015 19.3 3.0 1 23 346 369 346 369 0.96
Sequence Information
- Coding Sequence
- ATGCCGTTTCGAAGTGAAACCCGAGTTACCTCATTAACGAGAAAGGATGTCGACACGAGTGAGTGGCACAGTGTACCAATTAAATACGAGCCCCCCAGTGTTAACGTGGAGGTCGCCATCAAGCAGGAGCCGGAAGAGCCTGAACCTCCAGAGgAAGACAGTTGTAACTACATTATACCGGATATGTGTCCACCGAAAACGTCAAACATATTCATAAGTGACGTGTCGGAGGAAGTGCTCAGTCTGAATTCTACAATCGACGGCAAATACATGTGCCCAATATGTCATAAACGTTTCGCAAATAAGGGGAACGTGCAAAGGCACATGCTTTTGCATACGCGCGAAAAACTAGAATGCAATGTATGTTTCCGTCAGTTTGTGAAACAGGGCCACTATCAGAAGCATCTGCTAACCCATTCAACGGAGAAGCGGTACAAGTGCGAAGAGTGCGGGAAAATGTTCAGGACGTCGTCGAATTTGGAACAGCACAAACGGATCCACTTGGCCGTTAAGCCTTACGAATGCGAGACCTGCTTGAGGCAGTTCGCAGTTAAAGCGAATCTCGTGAAACATTTGAAGAGTACTAGCCGATGCAAGATGCCGAACCACGAACCGATCGTCTGCAAAGTCTGCAATAAAGTTTTCCAAAAGGAGTTTTTGTTGAAGAGCCATCTCCGCAGACACACGACGGAGCGGCCGTTCGTCTGCGACCGATGCCAAATGAGCTTCAAATATAAATCGACGCTCATCCGACACGTTCAGCTACACAATGGCGTTAAACCGTATTCCTGTAAGATATGCAGGAAGAAATTCACACACGCCGGCCTGATAAAGCCCCACATGAGGAAACACACCGGAGAGAAGCCCTACACTTGTCCGGTCTGCAACAAAAACTTCGCACACAAACACAACATGCAAAGACACACACTCAGACACACGAAAGTCAAACACTTGGTCTGCGACGTCTGCAACAAGACGTTCCCAAAGGAGAGTAGGCTCAAGTACCACATGCGCACACACACCAAAGCGAAGCCCTTCGTGTGCGACGTTTGCGGGAAGAAGTTTTCACACCGACAGAACATTATAAGACACTACAGTCGCAAACATCCGAACGACACATACGACTGCACAGACACAGACGCCAGTGTCGCGAAGGACGTTTGGGAGAAAGTTATTAAGTCTAAGAGTATGGAAGTGAAGTTGGAGATCACGGAAGTGAAGGAAGACTTGACGGAAGTCGGTGATAGCGTGTTGGGCGTAGAGAAGTAG
- Protein Sequence
- MPFRSETRVTSLTRKDVDTSEWHSVPIKYEPPSVNVEVAIKQEPEEPEPPEEDSCNYIIPDMCPPKTSNIFISDVSEEVLSLNSTIDGKYMCPICHKRFANKGNVQRHMLLHTREKLECNVCFRQFVKQGHYQKHLLTHSTEKRYKCEECGKMFRTSSNLEQHKRIHLAVKPYECETCLRQFAVKANLVKHLKSTSRCKMPNHEPIVCKVCNKVFQKEFLLKSHLRRHTTERPFVCDRCQMSFKYKSTLIRHVQLHNGVKPYSCKICRKKFTHAGLIKPHMRKHTGEKPYTCPVCNKNFAHKHNMQRHTLRHTKVKHLVCDVCNKTFPKESRLKYHMRTHTKAKPFVCDVCGKKFSHRQNIIRHYSRKHPNDTYDCTDTDASVAKDVWEKVIKSKSMEVKLEITEVKEDLTEVGDSVLGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843726; iTF_01507423; iTF_00986475; iTF_00985365; iTF_01506542; iTF_00695888; iTF_00824948; iTF_01078398; iTF_01079236; iTF_01080907; iTF_01080085; iTF_00796700;
- 90% Identity
- iTF_01506542; iTF_01080907; iTF_01079236; iTF_01080085; iTF_01078398; iTF_01507423;
- 80% Identity
- -