Vtam018120.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073304.1:2011918-2016555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.16 12 7.1 0.7 1 21 64 84 64 85 0.96 2 23 0.0066 0.48 11.4 0.6 2 23 157 178 156 178 0.97 3 23 0.016 1.2 10.2 0.1 1 23 182 204 182 204 0.95 4 23 0.63 46 5.2 0.8 1 15 209 223 209 232 0.78 5 23 0.01 0.77 10.8 0.6 1 23 238 261 238 261 0.97 6 23 0.0019 0.14 13.2 1.2 1 23 268 291 268 291 0.98 7 23 0.00031 0.023 15.6 0.7 1 23 298 320 298 320 0.97 8 23 0.35 26 6.0 0.4 1 23 433 455 433 455 0.92 9 23 0.0039 0.28 12.1 0.3 2 23 480 502 479 502 0.96 10 23 0.0015 0.11 13.4 2.4 1 23 524 546 524 546 0.98 11 23 0.023 1.7 9.7 4.6 1 21 550 570 550 572 0.95 12 23 0.13 9.5 7.4 0.1 3 23 579 600 577 600 0.90 13 23 0.0052 0.38 11.7 4.4 1 23 606 629 606 629 0.96 14 23 0.025 1.9 9.6 2.1 1 23 677 699 677 699 0.94 15 23 0.075 5.5 8.1 0.1 2 23 723 745 722 745 0.94 16 23 0.0055 0.4 11.7 3.3 3 23 769 789 768 789 0.98 17 23 0.0016 0.12 13.3 3.4 3 23 795 815 794 815 0.97 18 23 0.0033 0.25 12.3 2.0 1 23 822 845 822 845 0.97 19 23 5.9e-05 0.0043 17.9 2.4 1 23 851 874 851 874 0.97 20 23 0.011 0.81 10.7 0.7 1 23 880 903 880 903 0.97 21 23 0.00035 0.026 15.4 0.5 1 23 909 931 909 931 0.97 22 23 7.5e-07 5.5e-05 23.8 1.0 1 23 937 959 937 959 0.99 23 23 4e-05 0.0029 18.4 5.3 1 23 965 987 965 988 0.96
Sequence Information
- Coding Sequence
- ATGAGCAATGAGGCCGCGTTAAAACTTGAGTCGTCTGAAAATTTACTTGTAGAAGATCCTCTAAAAGTTACAGAAAAAAAACGTTATCAAAGAAGCGCAAGAGCCGAAGCGAGGCTGGCTACCAAGAAGAATGCAAGTGCTATTCTCGAATGTTGGACTCTCTGTCCGTTTAGGTGGAAAAGAAATCGATTTAAATGCGCTTACTGTGAGGATAATTTCATTGAATGTACAGAATTGAGAAGTCACATCAGACTATGTTCAACTCAACACTGCGTTAAGGATATATATAGCAAATTTAAGGAAATGTCACTTATAAATATTGACGTGACTGATGCGAGCTGTAGGATATGTGCCATGCCTTTTCAAGGGGTTAACGAAATGCGTAATCACGTTATTGAACACGGTTTTGACTTCGATACGTCTCATCCAGATGGTGTACTACCATTCTTCTTGGACAAAGAGGCGTGGAAATGCTTGATATGTCGagaatcatttaataattttctaaagCTCTATGAACACATGAATATACACTATCAACATTATATTTGTGCTACATGTGGTAAAGGTTATATGACAGCGCCTCGTTTGCGGAAGCATTCAGAAGTTCATATAAGTGGTACTTTTCCGTGTGACAAATGTAAACAAGTTTTTACCATGCGTGCTGCCCGAGATTATCATAAAGCTCACGCCCACGCTAAAGGTCCGCGCTACGAATGTCCACAGTGTAATATGAGATTTGAAGGCTATTATGAAAGAATGAACCACTTAAACAAAGAGCATAGGCAAAAGGAAGTGTTGTATAAATGTGCCCATTGCGAATTGTCTTTCAAAACGAGTGGGAAACGAGCTATCCACGTAAGATCAGTCCACTTTCCTCAGCAGCGAAATTTTGCCTGTCCCTTCTGTAAATGGTTATTTAAAACTGGCTACGAATTAAAAAGGCATATGGTTAAACATACTGgTCCCGCTCTTGCGGATTCAGAGGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGAAACGACGACGTCGGCGAGCAAACAACGAATTGCCAGAGGAATCAGATAAACGAATAGCAAAAACGATGATGCGTCGAAACGCAATGACACTTCTCGAATGTTCCACAGCTTGGGCCTTTCgcgaTGGAGTCGCAAAGGATATAACAGTAAAATTTGAATGGAAAAAAGTACGAAGAGTTACAGAAGATAAAGCAAACGCTGCCTTGCTTCTCGAATGTTCAAACGCGGTGGCCTTTAGGTGGATGCGCGGGAAATTTATGTGCGCCTACTGCCCTAAAATATGCGCTAACGTTAATGAAATACGTTCTCATAGCCAAGCGCACGATAAGCTTATAATTTTCCATAAACCAGAAGTTCGGAATTCATTTCCACTTAGAATTGATATAACAGATTTAAAGTGTAGTCTATGCGACTTAAGTTCTAGAAGCCTAATGGACTTAAAAACTCACTTGATAACAGAACATGAAAAGAATTTTAACTCTAAATATAGCGATGGCGTAATTCCATTTGTTTTGACTAGCTCAGAATATCGCTGTGTCCACTGCGACACTTTGTTTGAAAgctatatgaatttatttagcCACATGAACGAACATTATCAAAGTTTTGTTTGCTATACTTGCGGAAAAGGATACTCTGCCAAGCATAAGTTAAGAGCTCATCAGAAGTGTCATGAAACTGGAAAAATTGCTTGTCCTAAATGTGACCTCGTATTTGTAAATCATGTTGTCAAAAATCGACATGTCGCTGTGATTCATGGTCCGAAAAAGCGGTATCGTTGCCCTGTGTGCGATTTGACTTTCAAATCTTGTCATTCGAGATTAAAACATTTAGACAAAATTCATGGACAAAAAAGAGAATATCGATgGACGATCAAGACTGTAAATTGGAAACGGCGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATAATCGAATACTCTAATGCCTGTCCATTCCGATGGAAACGTGGTGCTTTCGCTTGTTCGCACTGTCCGAAAACATTCGGTCATTTTCAAGACGTTCTCAACCATGCTCAGGAACATAGTAATCGTCTTGAAGCGATGAGATACGCGCGGCCGTACGATAatgtaaaaatagaaattagtAATCTTAAATGTGAAATTTGTAACGAAGGTATGAACGATTTGGAGCAACTCAAAGAGCATTTGCTAAATGTTCACCAAAAGCCGATACATAAGGAGTTGAGCTTAGGCGTGACGCCATTCATTCTGCAGAATAAAGAAATGCTTTGTACGCATTGTGACGAAcgtttttctttgttttctaGATTGAATAGTCACATGAACCAACATTATCCGAATAATATTTGCTTTCACTGTGGTAAATCTTTCTCAGCCGTCCATCGGTTGAAAGCTCATCAGTTGACTCACGAATCGAACGAAATGGAACATAAATGCTCAAAATGTGACGAAGTATTCGGTACTCGAGCGTTAAAAAACTACCACATAAATACAACACACGCGCCAGAAAATCGCTATCGATGCCCGTATtgcaatttatcatttaaacgaTACTCAGACCGGTTGAGGCATTTAAAACAGCTTCACAATCAAAGCGTCGAATATCCATGTCACTTGTGTTCAGCAATTTTCGCTATGTCCGACCAAAGGACGAAACACATTAAGAATGTTCATATAAAACACAAGCAATTTCAGTGCGACTTTTGTCCGAGTAAATTCGTGACGGCTGGACAGTTGAAGAATCATCTTGTGAAGCATTCGGGACTAAGAGAATATCAGTGCAGTGTTTGTAAAAAGAGTTACGCAAGAGCTAGGACGTTAAAGGAACATATGAGGATACACAATAATGATAGACGATTTGTTTGTGAATATTGTAATAATGCCTTTATCCAAAAGTGCAGTCTTAAAAGCCACATGAGAACGCACCATCCAAACGCGGAACCCTCTAAGATTGcagtttga
- Protein Sequence
- MSNEAALKLESSENLLVEDPLKVTEKKRYQRSARAEARLATKKNASAILECWTLCPFRWKRNRFKCAYCEDNFIECTELRSHIRLCSTQHCVKDIYSKFKEMSLINIDVTDASCRICAMPFQGVNEMRNHVIEHGFDFDTSHPDGVLPFFLDKEAWKCLICRESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGTFPCDKCKQVFTMRAARDYHKAHAHAKGPRYECPQCNMRFEGYYERMNHLNKEHRQKEVLYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGPALADSEGVKVRRVRKLKENVCARQKRRRRRANNELPEESDKRIAKTMMRRNAMTLLECSTAWAFRDGVAKDITVKFEWKKVRRVTEDKANAALLLECSNAVAFRWMRGKFMCAYCPKICANVNEIRSHSQAHDKLIIFHKPEVRNSFPLRIDITDLKCSLCDLSSRSLMDLKTHLITEHEKNFNSKYSDGVIPFVLTSSEYRCVHCDTLFESYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGKIACPKCDLVFVNHVVKNRHVAVIHGPKKRYRCPVCDLTFKSCHSRLKHLDKIHGQKREYRWTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPKTFGHFQDVLNHAQEHSNRLEAMRYARPYDNVKIEISNLKCEICNEGMNDLEQLKEHLLNVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNEMEHKCSKCDEVFGTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKQLHNQSVEYPCHLCSAIFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCSVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHMRTHHPNAEPSKIAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -