Vtam018105.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073304.1:1936397-1942905[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-09 3.2e-06 27.2 0.0 1 36 154 189 154 195 0.88
Sequence Information
- Coding Sequence
- ATGGGGAAAAGCAAAAGAggtgaatatttatatagatgtaAATGTTGCTTGGATGAAGTAGGTTTAAAGAATATGTGGACGGAGTATTACAGAGATGGTGAACGAGAGATTTATGGGGAAATGTTGACGGACTGTTTTGCTCTTTCTTGGGAACAACCACCAGGAGACACAGAGATGGAACATATATGTGAGACCTGTGTGTCTCGTCTCCGAGATGccattaactttaaaaaagagATATTATACACGGAGCATTTGATTTTGGAACAATTAAAGAATgTAACGACTGAACACATCAAGCAGGAGGAGGAATCAGAAGATGAAATAGAAAcagaatatttaagtatagaATTTTTAGAAGATGACAATGAGAGAGATGAATCAGATATAAAAATCGAGAGACCTCAAGTGAAACAGGAAAAAGATGTATTGATGATAAACAGAAGAAGCAAGAAGTACACGGATGATGATTTAGAGAAGTGTCTAGAAGCTGTCAGGACTAAGGCTTTATCACAAAACAAGGCGTCGATACTTTATAGTGTACCGAGGAAGGCAATCAGCTCAGCCATTGCTAGAAGGCAACTACTGGAAGACACGGAGAATTCGAAGAAACGGAGACGACCCGACTTACAGAAACGTCAAGAGAACGTGGactatataatgaaatatacgaACGCGACGCCGTTTAAAGGATTCGTGCGAACTGGATACGGATGTTTCTTCTGTTCAGTCGAATACGAAAAGCCGACGGATCTGAAAGAACACACATTAGTCGAACATTTCAGCGAGAACATGCTCAGAGTTAATATCATATCTGATCGAAGCGTTAAATTGGATTTGACGGACCTAATGTGCAAAGTTTGCGAAGAAAGTATTGACTCCCTGGAGAACTTGCTCGATCACCTTAGATTGGagcataacataaaaataaacacggaCGTCCACAATCACCTCGTCCCATTCAAATTCGAAAGCGATACACTAAAATGCGCGGTATGTTCCGAGGAATTCCTAAGTTTCAAAGTGCTCAACGATCACGTGAACTTGAATCATTACAAGAACTACGCGTGCGAGGAGTGCGGTCGCGGTTTCATAAATAAGAGATCGTTACAATCGCACGGCTACAGGCACGAGACGGGCGTGTTCACGTGCCAGTTCTGTGCGAAAGTTTTCACGACGCGGATCCGTCGACTCGACCACGAGCGGTCCGTTCATATGTTCAACAATAAACGTCACAAGTGTGGCTATTGCGGGGAGAAGTTCATAGATATAGCGAAGAAGAAGGAGCACGAGGTGGTCGTGCACAGCGCGGCTAAACTAACATACAATTGCCAAGCGTGCAGCAAAACTTATAACAGTCAGAAGTCTTTGCGGACTCATATTAGAAGCTTCCACTTGATGCTTCGACCGTTCAAGTGTACCTACTGTAACCTAGGTTTCTATAAGAATATAGAATTGAAGAAGCATATGGTCAAGCACACAGGGGAGAAGGATTATCAGTGCGTCGTGTGCAATAAGGCGTACGGACGGAAGTCGACCCTGCGCGAACACATGCGGATACACGCGAATGACAGGCGGTTCAAGTGCGAGCTCTGCGGGCAGGCGTTCGTGCAGAAGTGCAGCTGGCGCGGACACATGCGGGCGAAGCACGGGGAGCAAGTTTAG
- Protein Sequence
- MGKSKRGEYLYRCKCCLDEVGLKNMWTEYYRDGEREIYGEMLTDCFALSWEQPPGDTEMEHICETCVSRLRDAINFKKEILYTEHLILEQLKNVTTEHIKQEEESEDEIETEYLSIEFLEDDNERDESDIKIERPQVKQEKDVLMINRRSKKYTDDDLEKCLEAVRTKALSQNKASILYSVPRKAISSAIARRQLLEDTENSKKRRRPDLQKRQENVDYIMKYTNATPFKGFVRTGYGCFFCSVEYEKPTDLKEHTLVEHFSENMLRVNIISDRSVKLDLTDLMCKVCEESIDSLENLLDHLRLEHNIKINTDVHNHLVPFKFESDTLKCAVCSEEFLSFKVLNDHVNLNHYKNYACEECGRGFINKRSLQSHGYRHETGVFTCQFCAKVFTTRIRRLDHERSVHMFNNKRHKCGYCGEKFIDIAKKKEHEVVVHSAAKLTYNCQACSKTYNSQKSLRTHIRSFHLMLRPFKCTYCNLGFYKNIELKKHMVKHTGEKDYQCVVCNKAYGRKSTLREHMRIHANDRRFKCELCGQAFVQKCSWRGHMRAKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506645;
- 90% Identity
- iTF_01508338;
- 80% Identity
- iTF_01508338;