Vtam020181.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073307.1:2911013-2913085[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-10 8.5e-07 29.0 0.0 5 38 1 35 1 38 0.92 2 2 0.46 4.3e+02 1.2 0.0 9 18 40 49 37 50 0.90
Sequence Information
- Coding Sequence
- ATGAAAAAAGCTGTTGAAGCTATAAGAACTAAAGAAATGGGTTATAAAAAGGCagtgaaattatttaatcttcCAAGAACCACTTTGAAAGATTACGTGAAAAAGTCTGACAAGCCTATAGAAGATGTAGTTTCTGGAAAAATGGGAAGAAAACCAGTTTTACCACTTGAATTAGAAGAAGAGTTGGTGAACTACTGCTTGCAAATGGAAAGTAACTACTATGGCTTGACCGCTTCTGATTTAAAACGAATGGCTTTCCAATTGGCTATCAGAAATAATATTCCGCACCCGTTTTCACAAACCAAAAATAAAGCAGGAATCACCACGGTTCAGCATAAAGTAAGAAAAGTCCTTACGATGAATGGCAAGAAAGCAGTTCACAAATTATCGTCTGCTGAAAGGGAAGCCCTAATGACTATTGTGACTTGTATGTCAACTTCTGGTCAATTAATTCCTCCATTAATGGTGTTTccaagaaaaaatatgaaagcaGAACTACTTGATGGAACACCTCCAGGCACCATTGGTGGATGTCATTCGTCCGGttactgtgggggtccctcaaagatcaattcttggaccatttctcttccttgtttatataaatga
- Protein Sequence
- MKKAVEAIRTKEMGYKKAVKLFNLPRTTLKDYVKKSDKPIEDVVSGKMGRKPVLPLELEEELVNYCLQMESNYYGLTASDLKRMAFQLAIRNNIPHPFSQTKNKAGITTVQHKVRKVLTMNGKKAVHKLSSAEREALMTIVTCMSTSGQLIPPLMVFPRKNMKAELLDGTPPGTIGGCHSSGYCGGPSKINSWTISLPCLYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -