Vcar005612.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999949.1:3674341-3677589[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.44 37 5.6 0.9 5 23 348 366 347 366 0.96 2 11 0.0077 0.66 11.1 0.2 3 23 374 394 372 394 0.94 3 11 0.66 56 5.0 0.7 2 23 403 424 402 424 0.92 4 11 1.6e-07 1.4e-05 25.8 1.3 2 23 429 450 429 450 0.98 5 11 0.0014 0.12 13.4 6.0 1 23 456 478 456 478 0.98 6 11 0.00013 0.011 16.6 0.3 1 20 482 501 482 503 0.95 7 11 0.00017 0.015 16.3 0.2 1 23 536 559 536 559 0.95 8 11 0.00017 0.014 16.3 0.8 1 23 579 601 579 601 0.98 9 11 6.5e-05 0.0055 17.6 4.5 1 23 607 629 607 629 0.98 10 11 0.0024 0.2 12.7 0.3 3 23 637 657 635 657 0.98 11 11 0.00084 0.072 14.1 0.6 1 23 663 686 663 686 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTTGGTCCGATTTGTGCCGATGCTGTCTGTCTCCCGATTCTGAGGTGTCACTTTTTGATACCGAAGAAAATGTAAGGGAAAAGTTTTTGGAAATTACAACAATTGAGGTTCAAGAGGATGATGGCCTACCACAAAAGCTGTGTGGTGATTGCTTCACCCTTATGACCACAGCTTACCAATTTCGCACACAATGTATGAAAGTAGACAAGGAACTAAAACTGCAATTAAATACATTAATAACTCACAGCAAAGATGAAGAATTTTCACAAATAGAAACACAACTTAAAGCAAGCGAAGATATGACCATAGAAGATATTGCAAAAGAGTCTATGAAGAAGCTAGAATCAATCATTAAAAAGGAACCAAACGACAGTGATGATGATTACTACTATGTTGTTGTAGTTGATAATCAAAAAGATCAAAGTGAAAAGTCTGATGATGAAAGAAGCAGAGACCTGGTGATAGAATCAATATCGAAAGATGAACCTGAAAATCAAGCTGCACAAAACCAGGAGGACCGAGATTTTGAAAATACAATAGATTCATTTCTTGTTTCTAATCCAAAAGTACCTACCGATGTACCTGCAACTATATTAGAAAATGAAGAAGAAGAACAGGATAATGGTGATCAATTTGATGAAAGTATGAATGTGGATGATGTCAATGAAATACACAATAGGGATTTGGCTGTAATTGAAGATCAAGAGAGACCTCATGAGTTCACAGTTCCTCTTTCTGGAGAAATGTTGAAAAGTCTGCCAAATGCTAAGAATTTTATCAAAATACTCACTCCTTCGGGCACAGAAAGAACTATCCTCCTTAAAAGCGATGATGGTATTAAGTATGTCACAGACCCTCTATCTCTTAAAATGGAAGATGGGGATTCAATGTCACAAGAAGTAATTTTATATGAAGGGGATGATTCTCCTCAATTTCAATTAGTTAAGTGCGACGGGTCAGAGCTGGTTATAGAGTATGCTGATGATAGCCAAATAGCAACTGTGCTTCAACAAGAAGATGGAACATTCCTCTGTGATTGCGGCGAACAGTTTGATGATTTGGATAATTGTGAGAAACATCAATACAAGCATAATCCAGCAGGTGATCATTTATGTAACCTATGCGGCAAAGGTTTCGAAACAGCCGAAATATTAACGGGACATATGCTCCTTCACAGTAATCCAGTAGGACTTCTAGTTACATGTCCATTTTGTAATCAAAATATAAAACGCAACACTCTCACCCAACACATCAAATACGTACATAATAGTAAACCCCAATGTAATGTATGCTCAAAAACATTTGCAAATCAAAATAATTTGAAACGCCATATGATGATTCATAGCGGTATAAAAGACTTTGAATGTGACATCTGCCATAAGAGATTCCATCAAAAAATCACAATGCAGACCCATCGACTAACGCACATTAACCCATTCACATGCAGTCAATGTGGTATCAAGTTTGAAAATAAATCCGAATTATCATCACATAGGGGATCAGATGAGTGTTCAAAGTCACGAATAATGAAAGTTAAAGAGGAACTCATGAAGACAGTCAAACAGGAAGTAACAACTAATTTTGGCAAATTGTTAGGCTATGCATGTTCATTGTGCAAAAAGATGTTTTCGGTAGAATCAGCATTGGAACAGCATGTGGAAAGTACCCATATTGTTGAATCTGAAGGCCAAAATGCTGAGAAGAATTTAAAGAAGACTACTAAAAGGTTTGAATGCTGTATTTGTGGCAAGGGATGTGCCAGTCAAGCAATGTTGATAATGCATGAAAGAGTTCACACAAATGAACGACCATTTCCATGTCAGCTCTGTTCATTACGTTTCAAGACAAAGACTCATTTAAGAACTCATCAACTCACTCATACACGTGAAAAGAAATTTGGTTGTTCAGTCTGTATGAAATTTTTTGCTTTGAAAGGTAATTTAGTTGTTCATTTACGCACTCATACTGGAGAGCGTCCATATGTATGTTCCATCTGTGGCGATGCATATATTGATTCTAAATATTTGAAGAAGCACAAGTTGAAAAAACATTCAATTGACAATGTACCGTGGGACAAGTACTAA
- Protein Sequence
- MESWSDLCRCCLSPDSEVSLFDTEENVREKFLEITTIEVQEDDGLPQKLCGDCFTLMTTAYQFRTQCMKVDKELKLQLNTLITHSKDEEFSQIETQLKASEDMTIEDIAKESMKKLESIIKKEPNDSDDDYYYVVVVDNQKDQSEKSDDERSRDLVIESISKDEPENQAAQNQEDRDFENTIDSFLVSNPKVPTDVPATILENEEEEQDNGDQFDESMNVDDVNEIHNRDLAVIEDQERPHEFTVPLSGEMLKSLPNAKNFIKILTPSGTERTILLKSDDGIKYVTDPLSLKMEDGDSMSQEVILYEGDDSPQFQLVKCDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFDDLDNCEKHQYKHNPAGDHLCNLCGKGFETAEILTGHMLLHSNPVGLLVTCPFCNQNIKRNTLTQHIKYVHNSKPQCNVCSKTFANQNNLKRHMMIHSGIKDFECDICHKRFHQKITMQTHRLTHINPFTCSQCGIKFENKSELSSHRGSDECSKSRIMKVKEELMKTVKQEVTTNFGKLLGYACSLCKKMFSVESALEQHVESTHIVESEGQNAEKNLKKTTKRFECCICGKGCASQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGDAYIDSKYLKKHKLKKHSIDNVPWDKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00695899;
- 90% Identity
- iTF_01079268;
- 80% Identity
- -