Vcar005831.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999954.1:293964-304445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.15 13.1 1.2 1 23 187 210 187 210 0.92 2 12 0.00076 0.064 14.3 1.5 1 23 214 236 214 236 0.97 3 12 0.00064 0.054 14.5 1.0 1 23 252 274 252 274 0.96 4 12 0.4 34 5.7 2.6 1 21 280 300 280 302 0.94 5 12 8.5e-05 0.0073 17.2 5.2 1 23 309 332 309 332 0.96 6 12 2e-06 0.00017 22.4 1.8 1 23 338 360 338 360 0.98 7 12 9.3e-06 0.00078 20.3 3.3 1 23 366 388 366 388 0.97 8 12 0.005 0.42 11.7 3.2 1 23 398 420 398 420 0.98 9 12 0.00051 0.044 14.8 0.2 1 23 426 448 426 448 0.97 10 12 0.00061 0.052 14.5 7.3 1 23 454 476 454 477 0.95 11 12 0.0015 0.13 13.3 3.9 1 23 515 538 515 538 0.95 12 12 0.00026 0.022 15.7 1.5 1 23 543 566 543 566 0.95
Sequence Information
- Coding Sequence
- ATGACTGAAATTTTGAATTTAAACGCATTATGTAGATGTTGTCATGCTGGCGGCAGCTTCAAAGAGTTAAATTCACCTTGCGAGATAAAGGGTTCTCTTGAACTATGTACGGATTTGTTACAAGACACTTTTGGGATAATTTTACAGTCATCATCAATTGATGTCAGTAACACCATATGTGAGGATTGCATAAGTCAATTACAAAATGCAACAACATTCAAGAGACAGGTGGTTGAATGCGAGCAAAAGTTTCAGGAGTACTGTAAAAATGAGTTATTACAATATACAAGTATTAAATTAGAAAAAGAAAATGATTTCGATGTTGTAGCGAAGACTGAAATAGATTTGAAAGATGAAGATAGTGACCATGATTATGAACCAATAGAAGAAACTTGTACAATTGATGTTAAATCTGAACATCAAGACAGCTCCAAGGTAGTAGTAGTAGAAGTAGAGAATAACCCCCCTGTACAACATGAAAAACAAAAGCGTAAACCTAAGGTAAAAAGTAAGAAGGTAAATTTAGGTAGAGCCCTAACCCAAGACAACGCAGACAAATATATATGTAAAATATGTGATATAAATTGTAAAAACGTCAAATCATTGAGGAAACATGTATCAGACATTCACAACACTATTTACAAGTGCAGTATCTGTGATATTAAATTTAAAAAACGTGAAGCATATGATAACCATGTTTACAAGCACTCCATATGCGTAAACCCTACGATACCTCTGTCAAATATGACAAAGTTTGATTGCCAAATGTGCAGCAAAAGTTACCGCACGATAAACGATTTACGTTTGCACAGAAACGCACACACTCGAGAGAGTACATACACATGTGACATTTGTAAATCGGAGTATCTGCGCAAGGTCACGCTGAAGAAGCACATCCTCTGTCACATGGGGCTAAATAAGAAACACATGTGCCATACGTGCGGGCACTCATTCAACGATATAACGAATCTGAACAAGCACATAACGACCGTACATGACAAGCTGAAGCTCTATAAATGCACGCTCTGTCCGAAGGAATTTTCCTCGAATAAAACGTTGAAGGTCCATACGCGTCTTCACACGGGCGAGAGGCCCTACGTATGCAACACGTGCGATAAGGCATTCATTTCACACTCAAATCTCTCGAAGCACAAAACTAAACACGAAAATAAGGAGAAATTCGGCGGTATATACATTTGCAAGTTTTGCAAGAGCGCCTTCGATCATCGCGGACTTTATACGAGTCATCTGAGATCACACATCGCAGTGAGGAAGTATAATTGTACGCTATGCGATGCAAATTTCGTGGACGGATACTCCTTGAAACGTCACGTGGAAAGCCACAGCAATGTCAAGAGTCACTCTTGCGATAAATGCGATCGGAAATACACGACAAAAGGGAAACTAAACCTTCACAAAAGGAAACACCATACGAGATTGAAAACGAATAAGAAAGTGAAAATCGAGAAAGTTGCATGCGAAGTCTGCAAGAAATTGTTTACGAATATAGACGAACATATGAAAGCGCATTACAACAAACGCCATAGTTGCGAATTCTGCGACAAATCGTACGCCGAGAGGAACACTCTGACGCGCCACGTGAAACAGTGTCACGACGGATTTCGCCATGAATGCGACGTGTGCGCAAAGAGGTTTGTCAACTCGACCGGCTTGAAGAAACATAAGATAAAACTCCATGGTGAAGTCGTAAAGAAAAAAGAGGAGGAATGA
- Protein Sequence
- MTEILNLNALCRCCHAGGSFKELNSPCEIKGSLELCTDLLQDTFGIILQSSSIDVSNTICEDCISQLQNATTFKRQVVECEQKFQEYCKNELLQYTSIKLEKENDFDVVAKTEIDLKDEDSDHDYEPIEETCTIDVKSEHQDSSKVVVVEVENNPPVQHEKQKRKPKVKSKKVNLGRALTQDNADKYICKICDINCKNVKSLRKHVSDIHNTIYKCSICDIKFKKREAYDNHVYKHSICVNPTIPLSNMTKFDCQMCSKSYRTINDLRLHRNAHTRESTYTCDICKSEYLRKVTLKKHILCHMGLNKKHMCHTCGHSFNDITNLNKHITTVHDKLKLYKCTLCPKEFSSNKTLKVHTRLHTGERPYVCNTCDKAFISHSNLSKHKTKHENKEKFGGIYICKFCKSAFDHRGLYTSHLRSHIAVRKYNCTLCDANFVDGYSLKRHVESHSNVKSHSCDKCDRKYTTKGKLNLHKRKHHTRLKTNKKVKIEKVACEVCKKLFTNIDEHMKAHYNKRHSCEFCDKSYAERNTLTRHVKQCHDGFRHECDVCAKRFVNSTGLKKHKIKLHGEVVKKKEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -