Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999936.1:8117398-8133748[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00036 0.031 15.3 0.2 2 23 120 141 119 141 0.93

2 11 0.00053 0.045 14.8 2.4 1 23 147 169 147 169 0.96

3 11 0.00012 0.0099 16.8 0.5 1 23 263 285 263 285 0.98

4 11 3.2 2.7e+02 2.9 0.1 2 23 292 314 291 314 0.89

5 11 0.00091 0.077 14.0 0.0 3 23 374 395 372 395 0.90

6 11 0.0023 0.2 12.7 0.2 1 23 411 433 411 433 0.96

7 11 8.6e-06 0.00073 20.4 0.2 1 23 459 481 459 481 0.98

8 11 0.00056 0.048 14.7 0.2 1 23 487 509 487 509 0.97

9 11 0.00032 0.027 15.4 0.3 1 23 515 537 515 538 0.95

10 11 0.018 1.5 10.0 0.6 1 23 551 573 551 573 0.96

11 11 0.0056 0.47 11.5 0.1 1 20 726 745 726 748 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00036	0.031	15.3	0.2	2	23	120	141	119	141	0.93
2	11	0.00053	0.045	14.8	2.4	1	23	147	169	147	169	0.96
3	11	0.00012	0.0099	16.8	0.5	1	23	263	285	263	285	0.98
4	11	3.2	2.7e+02	2.9	0.1	2	23	292	314	291	314	0.89
5	11	0.00091	0.077	14.0	0.0	3	23	374	395	372	395	0.90
6	11	0.0023	0.2	12.7	0.2	1	23	411	433	411	433	0.96
7	11	8.6e-06	0.00073	20.4	0.2	1	23	459	481	459	481	0.98
8	11	0.00056	0.048	14.7	0.2	1	23	487	509	487	509	0.97
9	11	0.00032	0.027	15.4	0.3	1	23	515	537	515	538	0.95
10	11	0.018	1.5	10.0	0.6	1	23	551	573	551	573	0.96
11	11	0.0056	0.47	11.5	0.1	1	20	726	745	726	748	0.93

Sequence Information

Coding Sequence: ATGGACTTAAAAGACCAAATCAAAATGGAGGGGGAAGATTTTCATCTTCATTGGGAGGAGGATGTAAAGACTGAAGAAATTATTGAAGATACTGATCAAATGGCAGCCGAAAATCTTATGTATTTATCACAAGATGTAGTCACCTATACAGAAAGTGCTGAGCTTGCTCAAGACCCAAATGTTGAATGTGTTACCGAAGAAGTTATTACTGATGATTGGGTTATATCTGGTGGACAAGAAAGAGTGGAGGTGCCTTTAGAACATTTAGCTAATCCTATTCAAGACATAAAAATAGAAAATGACATTGATGTTCCACTACCAACAGATCAAGACGAATACACAGCTATGCGTCCGTGGCCATGTGATTTCTGTTCGCGAAGGTTTCGCAAGAAAGCAGCGTTGATGAACCACATGGTGGCGCACCAAAACGACCGCCCGCACGCCTGCAACTTGTGCGGCGTCCGGTACGTGCGCAAGTGCGACCTCATGAACCATCTCAAGGTGCACGCATTTGTCCCTGACAACCCCGAACCCACGGACTACCAACATGATGAAATGATTGCTCATACTCCATTATTAAAAACTAAGAAAAAGAGAGGACGCCGGAAAAAAGTCGCCGAGCCCGTTGAGGAGCAGAACGGAGTGCGCGAGAACATGACGTCAGCGCGCACGCAGCAGTGGTCGCGCCGCGCGCGCGCGCCCCCCGCGCCGCCCCCCGCGCCGCCCTCGCCCTCGCCCTCCCCGCCGCCGCCCACGCCGCCGCTGCCCGCAGACCCCTCCAGGCCCTTCGTCTGTCGCCATTGTGGCGTCGGCTTTGCGAGGGAGAAGGCACTTCAGTCGCATTCTAGAGTGCACGGCGGCGACTCGCCCGTGGAGTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGCGCTCGCACGCGGCGTCGCGCCACCCGCACCTCGCGCACGCGCCCTCCGCGCCCAAGCGCGAGCCCTCCTACGACGATTGCAACTCAGGTGACGACATGGAATTCCGGCTGTCCCCGCTGGCACACAGCGGCAGCGAGCGCGGCGAGCGGGAGCGCGACCGCGAGCGCGGCACGCTCGACGTGCGCGGGCCCGAGCTGTTCTGCGGCGACTGCGGCGTGGCCTTCCAGCGCGCCGACCTGCTGAGGCGGCACGTCGCCGCTGCGCACAGTTACAAACGTCACGACAGTACGAGCAGTACGTGGGAGCAGGAGCACACTTGCGACGTGTGCGGCGAGAGCTGCCCCGACGCGCTGCAGCTGCTCGCGCACGCCGAGCGACACGCGGAGCGCCCGCGCACCACCAGAATGAAGAGACTGGCCCGTGGTCGAAACAACACTTCGAGTAATTCGAGGCAGTTCCCATGCAGAGAATGCGGCAAAGTATTCGGGTCTCGCAGCTCACAGCAGATCCACATTCGCATACACACGGGCGAGCGCCCCTACGCGTGTCGTTTCTGCTGGAAGGCCTTCGCAGACGGTGGCACGTTGCGCAAGCACGAGAGAATACACACAGGTGAAAAGCCGTACGCATGTGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTTGTACTGCGCGAGCACGTACGCTCGCACCACTCCGCGCCCGACCGGCGCGCTAACGGAGGATACCAATATTGCTGCGTAGTTTGCGGACGACCTTTACATTCAAGCGCTGAATTAGTTCAACATCTCATTCAGCACTGCGATGAAAATACGGCGCTGAAGAGGCAACCTCAGAATGGACCAAGAAAATACAAACGACGGCGAAAAGTGAAAGTGGAAGAGTCACCCGTGCACAACGACTGGGAGCGAGCCACGACCCCTTCGCCGGCGCGCTCGGCCTCGCCTGCCGGCGGGCCTTCGCCCTCGCCGTCCCCGCCGAGGTCGTCGCGCGCGCCCCGCGCCGCCCGCGCGCCGCGCGCCTACTCCCCCCCGCGCCGCCGCCGCCGCCGCGCCCCTCCCCCGCCGCGCCCCAAGATGATACACACGGAGGAGCCGCGACCCAGGACCAAACAGGTTCGGAGTCGCAGGCCTCCCAGACACCCAGCGGACGACTTGAGAGCAATCGGACCTCATTCCCCGTCACCGGCTCCGGCGTCGCCCGTAGCGTCTCCGCCCTCGCCCTCCCAGCTCACGACCACTACGGACGAAGGACCATACAAATGCGAAATGTGCTCATTGGAGTTTCCGCGACGTGACGCCTTGCTTCTTCATGTTCCTGTTCACATATGA
Protein Sequence: MDLKDQIKMEGEDFHLHWEEDVKTEEIIEDTDQMAAENLMYLSQDVVTYTESAELAQDPNVECVTEEVITDDWVISGGQERVEVPLEHLANPIQDIKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNPEPTDYQHDEMIAHTPLLKTKKKRGRRKKVAEPVEEQNGVRENMTSARTQQWSRRARAPPAPPPAPPSPSPSPPPPTPPLPADPSRPFVCRHCGVGFAREKALQSHSRVHGGDSPVECGECGELCWSREALRSHAASRHPHLAHAPSAPKREPSYDDCNSGDDMEFRLSPLAHSGSERGERERDRERGTLDVRGPELFCGDCGVAFQRADLLRRHVAAAHSYKRHDSTSSTWEQEHTCDVCGESCPDALQLLAHAERHAERPRTTRMKRLARGRNNTSSNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYCCVVCGRPLHSSAELVQHLIQHCDENTALKRQPQNGPRKYKRRRKVKVEESPVHNDWERATTPSPARSASPAGGPSPSPSPPRSSRAPRAARAPRAYSPPRRRRRRAPPPPRPKMIHTEEPRPRTKQVRSRRPPRHPADDLRAIGPHSPSPAPASPVASPPSPSQLTTTTDEGPYKCEMCSLEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824972;
90% Identity: iTF_01508280;
80% Identity: -