Vcar001659.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999950.1:8709574-8724597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6 2.2e+02 3.1 0.1 1 23 183 205 183 205 0.94 2 12 0.005 0.42 11.7 0.3 1 23 212 234 212 234 0.96 3 12 0.12 10 7.3 0.1 1 23 238 261 238 261 0.97 4 12 6.4e-06 0.00054 20.8 1.7 1 23 266 289 266 289 0.93 5 12 0.012 1 10.5 0.9 2 23 296 317 295 317 0.96 6 12 1.2e-06 0.0001 23.1 1.8 3 23 331 351 330 351 0.98 7 12 0.0012 0.11 13.6 3.8 2 23 358 379 357 380 0.94 8 12 0.0026 0.22 12.6 0.2 2 23 414 436 413 436 0.95 9 12 0.00051 0.043 14.8 2.8 1 23 443 466 443 466 0.95 10 12 0.022 1.9 9.6 0.1 6 23 476 494 475 494 0.92 11 12 3.1e-06 0.00026 21.8 0.2 2 23 504 525 503 525 0.97 12 12 1.3e-05 0.0011 19.8 1.6 1 23 530 553 530 553 0.96
Sequence Information
- Coding Sequence
- ATGGATCCCTCACCAGAAATGCGTACGGACATACAAATCAAAGAAGAACCCGTAGAATACCATGAAATGGATATTGAAGTTAATTTAAAAATAGAAAATGATATTACCAAGGAGGTCGACAATGTTCAACCAGATAATTTTGTCGCTATTAAACAAGAGTTTCCGAGCAAGTTGACTGTCAAATTAGAGCCTGTAGATCATGATGATAATACTTATGAAAACCAAGAAATAGTTCCGGAACAAATGATTATGAAACTTGATCCTTCATATTATGATGGTGAAATCTATAATAATTATGATGGAAAAGTATTAACTAAATCCAGAGTAAGACAAGACAAGGAAGAAGAGGATGATGACTATTTGCCTGCTAAGAGTAAGAAAAAGAAAAAGGAGTCAAATGTAAAACCTCTATTCAAGGGCAAACAACGAAACGACGAACAGACATATTCGGATGACATAACGAAACACATAGAAATAGTGACGATAGACGAGGCCGAGCGGATATTGGAGCATCACGACTTGTTCAATAGTCGGAAACACATGAACTACACGTGTGAGCCGTGCGCGCTGGGCTTTGTTATTGAGGACGCCTACCACATGCATATGAAAATACACTCGCCGGAGAACGGCAGCCACGCGTGCGACATCTGCGGCGCGCGCGTGAAGAGCGCGGACGTGCTGTACCGCCACCGCCTGCGCCACTACCGCCGCTACCGCTGCCGCGTGTGCGCGCTGCGCCTGCGCGACAAGGACACCGTGGCCGCGCACGTCATGCGCGAGCACGTGGGCGCCGCATTCGCTTGCACGCACTGCGGCCGCGGGTTCAAACGGCCGCAGTACCTGAAGCGGCACGTGGAGCAAATGCACACGCGGCCGCTGCACCTGGAGTGCCCCGTGTGCCAGCGCGTGTTCTACGAGCGGGGTTGGTACCGCTGTCATGTCAGGACTCACAATGAAGAAGTACGCAAGAATGTAGATAGGAAGGCGATATGTTCGCACTGCGGACGTGAGTTTAGGAATAAAGCCTACCTCATCCGACACTTGCAGACACACGAGGACCGGCAGCCAGTCGTGTGTAAGCACTGTTCTAGAACGTTCAAGAACATCGAAGTTCTCAGGGTACATTACAGGCAGCACCATTCGAAGAATCCTCTGAACGAAGATGGTACCTTCAACGAGAATTTCACGGGGCGGACGTACGCTTCGCAGGGCCGCGTCAGAGGGGCGGGCGCCAACACGACGTGCGGCGCGTGCGGGCGCGTGCTGACGACGCGCGCCATGCTCGCGCGCCACACGCAGCGCATGCACACCGAGCGCGTGCGCAAGTTCCAGTGCGACTACTGCAAGAAGTGTTACTTCACGAAGGCGGAGGTGCGCTCGCACATCGAGTGGTCGCACCTGCAGCGGCGCCGGCACGCGTGCGCGTGCGGCCGCGTGTTCCGCACGCCGGCGCGCCTGCGCGCGCACGCGTGCGCCGTGCACCTGCGCATCGCGCCGCCGCGCGACAAGACCTGCCCCGTCTGCGGGAAGATGTTCGCGAATCAGCAAGTGCTCACGCGTCACATCAAGGGTCACTCGGGTGAGACGTACCCGTGCAACGAGTGCGGGCAGAAGTTCAAAACGCAGTCCTACGTCAAGATACACTACAAGCTGAAGCATCTGAAGATGTCTCGCGCTGAGATCAAGGCGCAGAGCAAGCGGACTCTCATCACGGTGGAGAGCGCCATGGGCGAGAGGATGGTCACCAAGCTCAAGGCCTACGACCCCGTCGCCAGCGCCGACGACCCGCTCTACATAAACGCCCAGGAGAGGGAAACCCGCGTCAAAATAGAAAGCCAGGATATATCGGTGCCGCTGTTTGAAACGTTCGTCGATATCCAGCGGGAGTGTTGA
- Protein Sequence
- MDPSPEMRTDIQIKEEPVEYHEMDIEVNLKIENDITKEVDNVQPDNFVAIKQEFPSKLTVKLEPVDHDDNTYENQEIVPEQMIMKLDPSYYDGEIYNNYDGKVLTKSRVRQDKEEEDDDYLPAKSKKKKKESNVKPLFKGKQRNDEQTYSDDITKHIEIVTIDEAERILEHHDLFNSRKHMNYTCEPCALGFVIEDAYHMHMKIHSPENGSHACDICGARVKSADVLYRHRLRHYRRYRCRVCALRLRDKDTVAAHVMREHVGAAFACTHCGRGFKRPQYLKRHVEQMHTRPLHLECPVCQRVFYERGWYRCHVRTHNEEVRKNVDRKAICSHCGREFRNKAYLIRHLQTHEDRQPVVCKHCSRTFKNIEVLRVHYRQHHSKNPLNEDGTFNENFTGRTYASQGRVRGAGANTTCGACGRVLTTRAMLARHTQRMHTERVRKFQCDYCKKCYFTKAEVRSHIEWSHLQRRRHACACGRVFRTPARLRAHACAVHLRIAPPRDKTCPVCGKMFANQQVLTRHIKGHSGETYPCNECGQKFKTQSYVKIHYKLKHLKMSRAEIKAQSKRTLITVESAMGERMVTKLKAYDPVASADDPLYINAQERETRVKIESQDISVPLFETFVDIQREC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506567;
- 90% Identity
- iTF_01080937;
- 80% Identity
- -