Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999955.1:1811958-1823044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0013 0.11 13.6 0.1 2 23 37 59 36 59 0.95

2 11 0.0004 0.034 15.1 0.4 1 23 218 241 218 241 0.95

3 11 4.3e-07 3.7e-05 24.5 1.2 1 23 247 269 247 269 0.99

4 11 1.8e-06 0.00016 22.5 0.4 1 23 275 297 275 297 0.98

5 11 2.7e-06 0.00023 22.0 2.3 1 23 303 325 303 325 0.97

6 11 4.8e-06 0.00041 21.2 5.0 1 23 331 353 331 353 0.98

7 11 0.0004 0.034 15.1 0.4 1 23 500 523 500 523 0.95

8 11 4.3e-07 3.7e-05 24.5 1.2 1 23 529 551 529 551 0.99

9 11 1.8e-06 0.00016 22.5 0.4 1 23 557 579 557 579 0.98

10 11 2.7e-06 0.00023 22.0 2.3 1 23 585 607 585 607 0.97

11 11 4.8e-06 0.00041 21.2 5.0 1 23 613 635 613 635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0013	0.11	13.6	0.1	2	23	37	59	36	59	0.95
2	11	0.0004	0.034	15.1	0.4	1	23	218	241	218	241	0.95
3	11	4.3e-07	3.7e-05	24.5	1.2	1	23	247	269	247	269	0.99
4	11	1.8e-06	0.00016	22.5	0.4	1	23	275	297	275	297	0.98
5	11	2.7e-06	0.00023	22.0	2.3	1	23	303	325	303	325	0.97
6	11	4.8e-06	0.00041	21.2	5.0	1	23	331	353	331	353	0.98
7	11	0.0004	0.034	15.1	0.4	1	23	500	523	500	523	0.95
8	11	4.3e-07	3.7e-05	24.5	1.2	1	23	529	551	529	551	0.99
9	11	1.8e-06	0.00016	22.5	0.4	1	23	557	579	557	579	0.98
10	11	2.7e-06	0.00023	22.0	2.3	1	23	585	607	585	607	0.97
11	11	4.8e-06	0.00041	21.2	5.0	1	23	613	635	613	635	0.98

Sequence Information

Coding Sequence: ATGCATTTTCGAAAAATGACAACTCGTAATATACGAACAGTTAATGTGATTCCGATACCTAAAATAAAAAAGGAGAGGTTGAGCGATCAAGAGGACGAAGATACCGTATCATGTAGACTGTGCAATAAAGGCTTCATAACAGAAAAAGCATTGTTAAATCATGCAAGAGTTGAACATATAGATGAATATATGGCTGGACAAGATTTGTGTCTACGGAAACATGTAAAGCAGAAACGTAAGTACACGGAGGATGAAAAGCGTTCCATTGAATTGAAAACAGAGGAATTAATATCATCGATGGAACCGACGGACATCATGAGTCTGGCCTCCAATGACGTCAGTTATATTATAATTAAGGCCAACGGACAGCCGGAGATTAAGAAATGGAAGAAGGAAAAGTTAAAGGTAGAGAAAGAAAAACCAGAGAAGGTTGTTAAGACAGTTGTAAGGAAAGAAAGGGAAGTAAAAGCCATAAGCGGGCCGTTCGAATGCCTGCAGCCGTCGCCGCATAGCAGCGAGGGGCTTTGCCACCAGATATTCCTATCATGCTGCGCGTACTCTGCTCATCATCGTGACGAGCACACGCGCCGCCGGAAGGCGCTCCGCTGCCAGGTCTGCGAGAAGCCTCTCGCCCTCGCGCCGCACGACGCGCACGCCTGTCAGATATGCGGAATGGGTTTCGAAAATTCAAAAGATCTATTCGACCACAGTCAGACGGCGCACATCAAACTCAAGCCGTTCCAGTGCACGATATGCCAGAAGCGCTTCACCCAACAGGGGGGGGTTCAACAGCATATGCGGATGCACACCGGCGACAGGCCATTCCCGTGCACGTTCTGCCCAAAGGCCTTCACCCAGAAGTCCGGTCTCGATCAGCACCTGCGCATACACACGAAAGTCAAACCGTACAGATGCATCATATGCAGTAAGGCCTTCTCCCAGTCCGTGCATCTACAACAGCATATGCGCACACACACAAACGTAGCACCATTCCAGTGCGGTATATGCCAGAAGCGCTTCAAACAGAGCAGCCATTTAAACTACCATTTGAAATATCACAATCCAGCGAACATGACCGATGAACAGAAGGAGAGATATGCGAAATTGGTACAGCTGATGGGTCAAGGTGAAATGGTCGAGGTGGAGATTGATACAAGTCAGCCGGAAGTTATGTTGGAACAAGTGCAGAGTGATGATATAGCGACTTGTGTTGTCGATGAGAGTGGAAACTGGTGTGAAGTGAGAAGTGACCTCTGGCGGACCTCTTTTTACGACTTCGACGTATTGACGACCTCGAGTGGTGTGTACACCGGTTTTCATGGCGGGCCGTTCGAATGCCTGCAGCCGTCGCCGCATAGCAGCGAGGGGCTTTGCCACCAGATATTCCTATCATGCTGCGCGTACTCTGCTCATCATCGTGACGAGCACACGCGCCGCCGGAAGGCGCTCCGCTGCCAGGTCTGCGAGAAGCCTCTCGCCCTCGCGCCGCACGACGCGCACGCCTGTCAGATATGCGGAATGGGTTTCGAAAATTCAAAAGATCTATTCGACCACAGTCAGACGGCGCACATCAAACTCAAGCCGTTCCAGTGCACGATATGCCAGAAGCGCTTCACCCAACAGGGGGGGGTTCAACAGCATATGCGGATGCACACCGGCGACAGGCCATTCCCGTGCACGTTCTGCCCAAAGGCCTTCACCCAGAAGTCCGGTCTCGATCAGCACCTGCGCATACACACGAAAGTCAAACCGTACAGATGCATCATATGCAGTAAGGCCTTCTCCCAGTCCGTGCATCTACAACAGCATATGCGCACACACACAAACGTAGCACCATTCCAGTGCGGTATATGCCAGAAGCGCTTCAAACAGAGCAGCCATTTAAACTACCATTTGAAATATCACAATCCAGCGAACATGACCGATGAACAGAAGGAGAGATATGCGAAATTGGTACAGCTGATGGGTCAAGGTGAAATGGTCGAGGTGGAAATCGATACAAGTCAGCCGGAGGTTATGTTGGAACAAGTGCAGAGTGATGATATAGCGACTTGTGTTGTCGATGAGAGTGGAAACTGGTGTGAAGTGAGAAGTGAGGAACAAGCGTTGTGA
Protein Sequence: MHFRKMTTRNIRTVNVIPIPKIKKERLSDQEDEDTVSCRLCNKGFITEKALLNHARVEHIDEYMAGQDLCLRKHVKQKRKYTEDEKRSIELKTEELISSMEPTDIMSLASNDVSYIIIKANGQPEIKKWKKEKLKVEKEKPEKVVKTVVRKEREVKAISGPFECLQPSPHSSEGLCHQIFLSCCAYSAHHRDEHTRRRKALRCQVCEKPLALAPHDAHACQICGMGFENSKDLFDHSQTAHIKLKPFQCTICQKRFTQQGGVQQHMRMHTGDRPFPCTFCPKAFTQKSGLDQHLRIHTKVKPYRCIICSKAFSQSVHLQQHMRTHTNVAPFQCGICQKRFKQSSHLNYHLKYHNPANMTDEQKERYAKLVQLMGQGEMVEVEIDTSQPEVMLEQVQSDDIATCVVDESGNWCEVRSDLWRTSFYDFDVLTTSSGVYTGFHGGPFECLQPSPHSSEGLCHQIFLSCCAYSAHHRDEHTRRRKALRCQVCEKPLALAPHDAHACQICGMGFENSKDLFDHSQTAHIKLKPFQCTICQKRFTQQGGVQQHMRMHTGDRPFPCTFCPKAFTQKSGLDQHLRIHTKVKPYRCIICSKAFSQSVHLQQHMRTHTNVAPFQCGICQKRFKQSSHLNYHLKYHNPANMTDEQKERYAKLVQLMGQGEMVEVEIDTSQPEVMLEQVQSDDIATCVVDESGNWCEVRSEEQAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -