Vcar010766.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vanessa cardui
Gene Symbol
-
Assembly
GCA_905220365.1
Location
LR999942.1:6050472-6066771[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.5e-05 0.0063 17.4 0.1 3 23 131 151 130 151 0.97
2 15 6.8e-07 5.7e-05 23.9 1.2 1 23 157 179 157 179 0.99
3 15 4.2e-06 0.00036 21.4 2.7 1 23 185 207 185 207 0.99
4 15 2.8e-06 0.00024 21.9 2.6 1 23 222 244 222 244 0.98
5 15 2.7e-07 2.3e-05 25.1 1.5 1 23 259 281 259 281 0.99
6 15 0.00012 0.01 16.8 2.8 1 23 287 309 287 309 0.98
7 15 0.027 2.3 9.4 1.8 1 23 316 338 316 338 0.98
8 15 4.5e-07 3.9e-05 24.4 2.3 1 23 344 366 344 366 0.99
9 15 0.031 2.7 9.2 1.8 1 23 373 395 373 395 0.98
10 15 1.9e-06 0.00016 22.5 1.5 1 23 401 423 401 423 0.99
11 15 0.00035 0.03 15.3 0.7 1 23 430 452 430 452 0.99
12 15 2e-06 0.00017 22.3 1.9 1 23 458 480 458 480 0.98
13 15 0.0015 0.13 13.3 0.3 1 20 486 505 486 508 0.93
14 15 2.8e-05 0.0024 18.8 1.3 2 23 515 536 514 536 0.96
15 15 2.6e-06 0.00022 22.0 1.4 1 23 542 565 542 565 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATTAAGGCTGAGCCTATGAGTTTCTACACACATCCACATATAAATACCGGTCCCCCAACAATAGTCCGTTCCGATTCAAACCATGGGATCATAAATATGAACCAGCACCATCCACAAGAAGATTCCAAGGATAGCCTCATAGTACAACAACAAGTACAACACCAACAGGAGCTGCTGGAACAGCACCAACAACACGAAATGCATGATGATGAGGTAGACAATCTTAGCTTCAAGGGCATGGAAGATGAGGGGGTAGAAATGGACATGGATGGTCGACAATGTTCTCAGGGTATGGGGGTTGACATGGGGTCAGTTCAAACAAAAATGGAAGTTTCAAATGGTGGCCAAGGAATGCCAAGGTCGAAACCTCAAGCCTGTAAGGTTTGTGGAAAGGTACTTTCGTCAGCTTCTTCCTACTACGTCCACATGAAGCTACATTCAGGAAATAAACCCTTCCAATGCACAGTGTGCGACGCGGCGTTCTGCCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACTGGCGAGCGCCCGTTCCAGTGCGACCTGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAGCGCGTGCACACCGATGAGCACATGCGAGCCTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGACCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACTTGCAAGCAGTACCTCGAAATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAATCTACACTTAACATACACAAAAGAACGCACACAGTGCAAGGGCGGCCGTATCAATGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACTGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACCCTCAACATTCACAAGCGCATTCATACCGGGGAACGTCCATACGCATGTGATATTTGCCAAAAACGATTTGCAGTGAAGAGTTACGTAACAGCACACAGATGGTCTCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCCTGCTACGAGTGCAGCGTCTGCGGCCGCACCTTCGTCCGCGACAGCTACCTCATACGACACCACAATCGGGTGCACCGCGAGAACCACAGCAACGTGTCAGCGAATAGCATCGGCACTATCAACAGCGTGGCCACCAACACGAACAACTCCAACAACGGGAACTACGACTCGCCCGGTGTCTGCGATTTAAGTTTCGTGCCAATGGTGAACCGTTACATGACGTCTCAAGGCACCCAGGTGTCGATGCAGGACACGCAGAGCAAAATGTCCGCCATGTCGCCGCAGTCCATCGCCTCAATCTCGTCGCCGCCGCCGCCGCACACGCCCACGCCGCAGCCGCTGCCCGCGCTGCGCCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHINTGPPTIVRSDSNHGIINMNQHHPQEDSKDSLIVQQQVQHQQELLEQHQQHEMHDDEVDNLSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQGMPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPLPALRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
-
80% Identity
-