Vcar021866.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- RCOR3
- Assembly
- GCA_905220365.1
- Location
- LR999939.1:9235300-9245984[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-10 1.4e-06 28.9 0.0 3 46 133 176 131 176 0.97 2 2 1.9e-11 2.8e-08 34.3 0.0 3 46 372 415 370 415 0.96
Sequence Information
- Coding Sequence
- ATGGTTTTGGCTGAAAGAAGTAACGATGTTCGAAACGGGAAGCGTTCGAGAGGGCCAAGCCCGAATGGTCACGGGAGCCCTGATTCTAGTTCTGAAGACGAAAACGCAGTAGTGCCATTTGCAGCTGAAAAAATAAGAGTGGGGCGTGATTACCAGGCAGTGTGTCCTGAGTTGGAACCCTTGGAGCAAAGGAAACCTGATCAAATATCAGACAGAGCTTTACTTGTTTGGTCACCAACTTCTGATATATCAGACATTAAATTGGATGAGTATATTACTATAGCAAAAGAAAAATATGGTTATAATGGCGAACAGGCACTTGGTATGTTGTTCTGGCATAAACATGATCTCAATCGAGCTTCCATGGACCTCGCTAATTTTACACCATTTCCTGATGAATGGACAGTTGAGGACAAAGTGCTGTTTGAACAAGCTTTTCAGTTCCATGGCAAAAGTTTTCACAGAATAAGACAAATGTTGCCAGACAAGTCAATTGCATCACTAGTAAAATATTATTATTCTTGGAAAAAGACAAGAGCTCGTACATCTTTGATGGATGTCGTGAGTGAAGGTCGTAATCCTACGGGCTCTGGAAGTGGGAAGAGGGAATCAGGAGCGGGTTCAGAACCGGGTGGTTCTGATAAAGATTCCGATAATGATGAAAAGGGCGAGGGCGGCGGCGAAGCGGGCAAGTGGTGCACCGTCTGCGGCATTCTGTGCTCGCAGACCACGCCGCACAACTCGCACAAGTTGTGCCAGGCATGCCTCGTGCACGCCAGACGCACCGGCACGATGAGACCGCTGTGTGGGCCGTCGGGGCGTCGCGGGCCCGGCTCTAAACAGCAGCGGTACAAGCACCGCCTGCCGCGAGGCATTTACATCAATCACGACGATCTCGTGGCCATGGCCACCGGCCCGCAGCCCGGCGACCCCTCGCAGCCCGGCCTTGTCAATCAGGGGGAGGCTATGCTCAAAGCCATGGACAGAGAGATTATCTCGCTCAAGAGACAAGTTCAACAAAATAAACAGCAGTTGAGTGCTATGAAACGCAAAGTGGGAGATGCAGGCGTAGAGGAGCTGCGACCCGGCGAACCGCCCGCAAAGATTAATTCGCGCTGGACTAATGACGAATTACTGATGGCAGTCACGGCTGTCAGAAAATATGGTAAAGATTTCCAAGCTATTGCTGAAACACTGGGCACTAAGACAGAAGCACACATCCGCACGTTCTTTATTTCCTATCGCCGTCGATATAATCTAGACGCGGTACTACGCGAGCACGAAGCTGACCGCGGGAGCGCTAATCACATACAAGCTGCAGGTACAACAAGCACAGAATCTACTGACAATGATGTAGATAACAGTAATGCCAACAATGGTACAGGTTCTCCGCAAACAAATACAAAGGATGAGAAAACCGAAGTGGACAGCGAGGGCGTCGCCATTGGCGCGTCTGCGGAGCAAGGCGGCCCGCCCACCACGCCGCCCAAGCACAAGCCGAGCAAGTGA
- Protein Sequence
- MVLAERSNDVRNGKRSRGPSPNGHGSPDSSSEDENAVVPFAAEKIRVGRDYQAVCPELEPLEQRKPDQISDRALLVWSPTSDISDIKLDEYITIAKEKYGYNGEQALGMLFWHKHDLNRASMDLANFTPFPDEWTVEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKKTRARTSLMDVVSEGRNPTGSGSGKRESGAGSEPGGSDKDSDNDEKGEGGGEAGKWCTVCGILCSQTTPHNSHKLCQACLVHARRTGTMRPLCGPSGRRGPGSKQQRYKHRLPRGIYINHDDLVAMATGPQPGDPSQPGLVNQGEAMLKAMDREIISLKRQVQQNKQQLSAMKRKVGDAGVEELRPGEPPAKINSRWTNDELLMAVTAVRKYGKDFQAIAETLGTKTEAHIRTFFISYRRRYNLDAVLREHEADRGSANHIQAAGTTSTESTDNDVDNSNANNGTGSPQTNTKDEKTEVDSEGVAIGASAEQGGPPTTPPKHKPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00018116;
- 90% Identity
- iTF_01151158;
- 80% Identity
- -