Vcar009855.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999933.1:14218530-14219838[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-11 2.1e-08 34.3 0.2 4 39 16 51 15 57 0.86
Sequence Information
- Coding Sequence
- ATGGAACATTCCATTAAAAGAAATCGGGGTCTATGGACACTTCAACAGCTGGAGGCAGCTATGGCTGCTGTCAAAGACGGAGTCATGTCTCAACGTGCTGCTGCTAAACATTACTCTATACCCAGAAGAACATTGGTAAACCATCTGAAATCAGGCAAAGTGGAGAAACAGATAGGACGTCGCACAATTATGACGAAACAGCAAGAAAATGATCTAGCTTCAAGGATTAAGCGACTAGCATCCATAGGATTTCCTTTAACGCCTAAATTGTTACGCCACCAAGCCTTTGTTTTTTGCGAATCAAATAATATTCCGAATAATTTCAATAAATCTACGAAGCGAGCTGGCAAAGATTGGCTCAAACTATTTTTAAAAAGACATACTGAGATATCAAAGCGCAAAGTTCAAATATCCAATATCCACTTTATTACAACTGATTCTGACTCACCTGATCCAGGGAATCACAATACTAATACTGAAATAAGAAGACCAGTTATTTATAGCTCTGATACAGACTCTTCTAGTGTTGAATTGACGAAAATGCTCAATGAACCCGGCACGAAGTCTTTCTTCGGCATATACTCGAGTTCAACAGACAATGAAAATGAAAATTCTGCAACTAAGCAAGATCGCACTCCCATCAAGCAGATAACTGCTAGGCATGTAAAAGCTACGAAGAGCTTAAGACCTGTCACAAGTGACGAAAATTCTGAAGATGATGTACCACTAAGAAAGTTACAAGAGAGAAAGAAATCATTTCAAGAGCTCATACCAACACCAAACTTTGCCATTGTCAAACAAAACCCAAAACGTAAAGCAATTAATTACAAAGCTCAGATTGTTACTAAAAATTTATTTGAAGAAAGGCAAACTCATAAAGAGAAGAATAAGAAAAGAGAAAGAAATATAAGTGATACTGATATAGAGAAGCAACGGAAATCAAATCTGAAGGAGGGTCACCGGCGAAAAGTAAACATTAAGGATCGTTCTAGAAGGTGCGAAAAAGGAAAAAAAGTGAAAGAATCAAAGAAGAAAAGCAAATTAAGTAGAGATGAAATTGATACTAATGATAGATGGTACTGTTATGCATGTAATACAGAAAGATTAGAAGATATGCGACAGTGTCCATTATGCCAAAAGTGGTTTCATGAAGCATGCGTGGGACTTACTAAAGAAGATACGGATTTTGCTTGTCCAATGTGCAATTAG
- Protein Sequence
- MEHSIKRNRGLWTLQQLEAAMAAVKDGVMSQRAAAKHYSIPRRTLVNHLKSGKVEKQIGRRTIMTKQQENDLASRIKRLASIGFPLTPKLLRHQAFVFCESNNIPNNFNKSTKRAGKDWLKLFLKRHTEISKRKVQISNIHFITTDSDSPDPGNHNTNTEIRRPVIYSSDTDSSSVELTKMLNEPGTKSFFGIYSSSTDNENENSATKQDRTPIKQITARHVKATKSLRPVTSDENSEDDVPLRKLQERKKSFQELIPTPNFAIVKQNPKRKAINYKAQIVTKNLFEERQTHKEKNKKRERNISDTDIEKQRKSNLKEGHRRKVNIKDRSRRCEKGKKVKESKKKSKLSRDEIDTNDRWYCYACNTERLEDMRQCPLCQKWFHEACVGLTKEDTDFACPMCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -