Vcar003923.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- ct
- Assembly
- GCA_905220365.1
- Location
- LR999934.1:2097974-2109281[+]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.65 5.7e+03 -2.1 0.0 4 19 104 119 102 124 0.83 2 2 9.3e-28 8.1e-24 84.0 0.0 3 70 280 348 278 355 0.94
Sequence Information
- Coding Sequence
- ATGGTGCATGGATGGCAGTGCAAAGGATACAAGGTCATAGCCACCGTTAGCGATACAGCACTTATTTACCGACCTTCATTGATTAGCAGACGGAAGCGGCCGGATTTCCGCTGCGTCCGAGATTCGAATCTTCACGGTCGAAGCGTATCGAAGGTTTTACATAAAAACACTGAAATTGCTCAACTAGTTGAAGACGTGCGACGTCTCCAAGCGTCGCTTTCAGCGCTGCAAGAAGCGCATGCGCAGCAATTGCAGCGGCTGGAAGAAAGGCTGGATGAGAAGAAACAGCACATCGCCAGGCTCGAAGCGAGACTGGACACACAACGAGACTATGACGAAATTAAACGAGAAATCAGCATGCTCCGTTTCTCGGAGCTGGGCCCTACCGAGAGGCCTCACTCACATACACTACCTAAAGACATATTCGGATCACAGAATCATTTACTCCGGTCCATGGACTTGGGTCCCAACGAGCGAGTAGAGCGCAAGGAGGCGCTCCGCTCGCCCGCTGCGCCCGCGCACCGCGACAGCTCCGCCGAGCGAGAGCGCAGCACGGAGCGACGAGACACCGGTGGCGACGAGTGGCCGAGCACACCGCCCCCTCTCAACAACAACACCACGCACCACAACAACAACGGGCCAGTTCCGTTGCCGTTGCCGCCGCCGAGCCCGTTCCGTTTCGAGGAGCACCGCCCGTACCGTTTCGCAGAGGACATGGGCCCCCTACCTCCCGGCGCTCTCGTCGGTCGCCTCGGCGACTCCCTCATACCTAAAGGCGATCCCATGGAAGCAAGACTGCAAGAGATGCTCAGATACAACATGGACAAATACGCGAACTCCAACTTGGACACGCTACACATAAGCCGACGGGTGCGAGAGCTGCTATCGGTGCACAATATCGGACAGAGGCTGTTTGCGAAGTACGTCCTCGGCTTGTCCCAGGGGACCGTGTCGGAGCTGCTCTCGAAACCAAAGCCCTGGGACAAATTGACTGAGAAGGGCCGGGATTCGTACAGAAAAATGCACGCGTGGGCCTGCGACGAGGCTGCCATCATGCTACTGAAGTCACTTATTCCTAAAAAAGGTATCTATTGA
- Protein Sequence
- MVHGWQCKGYKVIATVSDTALIYRPSLISRRKRPDFRCVRDSNLHGRSVSKVLHKNTEIAQLVEDVRRLQASLSALQEAHAQQLQRLEERLDEKKQHIARLEARLDTQRDYDEIKREISMLRFSELGPTERPHSHTLPKDIFGSQNHLLRSMDLGPNERVERKEALRSPAAPAHRDSSAERERSTERRDTGGDEWPSTPPPLNNNTTHHNNNGPVPLPLPPPSPFRFEEHRPYRFAEDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNMDKYANSNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAIMLLKSLIPKKGIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00695268;
- 90% Identity
- iTF_00786559;
- 80% Identity
- -