Vcar011556.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vanessa cardui
Gene Symbol
JARID2
Assembly
GCA_905220365.1
Location
LR999924.1:8542906-8570488[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-17 3.3e-13 50.3 0.1 6 89 734 820 731 820 0.88

Sequence Information

Coding Sequence
ATGAAAACGAAAGTCCAAGCCCAACGAAAGTTTGCTCAGGGAGCTTACGTGCCACCAAGTGCGAATATTATCAATACTGTTATAAACAGGAGAGTTAATAATTCTAATGGCAAACCGAATCGATATTTTTTTCGTCATAACACTTCAGCGGGAAGACTTTTGGACTCAATTTCATTTGAAGGTATTCACACCCATAAACCAGTAGTTGTATTGGAAAGATTAGAAAACCATCAATTTCAACAAGTGGACAATGAACCTGACGATGCCAGTGACATATTGATACCTATTAATACTGTACCCACTAAAACACAAGTTACGGCAGTCTCAAGGAGATTGCCTTCACTGAGAAATGCTGCAACACGGAATTCATCATGTTTGTGTTCGAGATCAAGAGTCGAAAAGAAGAAGATTATTTCGAAAAAGAAACCTATTAAACATAATTATCCTCTTAAAAGAATAAGACGTAAACCAACTAGAAACAGAAAATTTTATATGAAGTTGAGGTCGGCCAGACCGGCATCCACCGTTGATACAGATTTCTCAATTGAAGATGATAAGCCTTTGATGTTCTACACCAAGAAAACAAAACGAATTATCAAAAAGCAAGAAAAAACACAAAAGGTTCCACTAATGACTAATAAAGAAATTCCACAAATGAAGCAGGCGGCGCCGAATATTCAATCTACGAATGTTGCGACTGATGCCTCACAATCAGAGACTGCTAGTCAAACACAACCTCAAACTGTTAGGGCGGGCGTCTCCCAAACGGGGTCGGTCTTGCAACCGCGATCACAAACTATGAGGGCTGGTGTCTATCAATCGGTACCTCAATCACGATCTCACACAATGAGGGCTGGTGTCTACCAATCTCCTCAATCGAGATCTCACCCCATGAGGACTGGTGTCTCACAATCGGTAGCGCAATCGAGACTTCACACTATGAGGGCCGGTGTCTATCAATCGGTGCCTCGATCGCGAGCTCACAGTATGAGGGCTGGTGTTTATCAATCAGTACCTCAATCGCGAAGTCATACTATGAGAGAGATACCTGGAGTATGTCCACCCGAGAGAGTACAAACTTATCGACGGCTAAAACGATTTCGTACTGAGGCTGCTCAGTTAAGAGTCGCGCAAAATGCGCGTGCATCACAATTCGATTCGATAAAGGAATCAAAACCTCAGCCTGTGATCGAAATTCCCGAAGAGGACATGGCAGATGATTCTTGTCCAGTGAATAGTAAATCTTGTGCCTTACCATTAGAGACGAAAGCTCAATCCCTACCTCAGAACAAAATGGAAATATCTGAAGTGTGTGCACCTAAACTTGAGAAGTCTCTCTCACCGAAAAGTACACTACGCACTGAGTCGGGGTCTCAGTTACAAGCCGTGCCAACTGAAGTACCAGAAGTTAATGCTGGTTTGAAGACTTATCCGCCAATGGCTTGTGCCATTAAATTTGAGACGGAACCTCAGTCTCACTCTCAAACTCCAATGGATATACCTGAAGCGTGTGTTCCTAAATCAGAAGAGTTGTCATCGAAAAGTACAAATCGCTCTGAGTCGAAAGATCATTCACAAGTTATACAAACCAACGAAAAACACCAAAGAGTATCCGTTGCGGTGCCCTCACCGGATTATACAAATAAGAATGTCTTTCAAACAAACGATACTTCGTTTTATGGGAATAATGGAATAGCAAACTGGATGTGTAATTCACGTGCAGTAAATGAAGTTCCCAATGATGATACAGCGGAGGTTAAAGAAGAAAATGGTACCGCATCTGACAACTGTCACCCTCTTGAAACAAAGGCCAATGGAGCGGACGATGGAGCGGTTGCTGGTCCGTCAACTACAGACAATGCCGAGGAATGTGAGTCACCGACCCCTATATCTGGAAAGAAACAAAACGGCAAAAAGAAAACTAGGACAACCAGACGAAAGAAAAAAATTGGTCCTACCAAAAATTCAGACGCGAAAATATTAGAGGCACCCGTGTTTCGACCGAACGAAGAAGAGTTTCGAGATCCAATAGCATATTTCCAAAAAATAATGCCAGAGGCGGCTAAATTCGGTTTGTGCAAAGTGATCGCCCCGGCGGGATTCAAACCAGAATGCACGATTACGGATTCGATTCGTTTCGTAGTAACAAATCAATACATTGCAAGGTTGTACAGTCGCTGGGGTCCAGTGACTCGGGAACTATGCGCCTTGCGCTCATTTTTAACATCACAAAATATTACGTTCTCCCACGCGCCCTTAATGGAGGGCTTAGAAGTTAATTTGCCTAAGTTGCTGCATTTCGTACAACGGCAAGGTGGACTCAAGGCGAACGTCAAAAGCCGCACATACGTCGATACGAGGAAGTGGAACAGGCTGGCAGAGGAACTTAATTACACGAAAATGAACAACCCCGCCAAGAAACTCGATCAAATATACGTGAAGTATCTGTTACCGTACGACGCCCTCACTCAGAAGGAACGTCAAGATCTGGCTGAGCAAATGGATAAGAGATGGTCGAAGAGAAACGACAAATTGTTGCAACGAGCGCAAAACCCGCTGCATCGCCAGAGGAGACTGCTGGGAGAGTCTGACTCATCAGATGATGACGACTGTGAGGAAAACCAGCAAATAGCCGCAGCACTAAACGAAGCTGAAGAGTGCGTGATCCGGGGCCGAGTCATGAATCTTACCAATTTTAAAAAGATAGCCAAGACTGCGCTGCAAATATTTTTCCCGTTGAAACCGACGACCGCCGAAGTGGAAGCGCAATACTGGAAGCTCGTGCTCCTCGGCAACGAGCACGTGTGCGTCAACACCGCGTCCATAGACACGGGCACCGAGGGTTACGGGTTTAGCAAGAACAAAAACGAACCCTACGGCAAACATCCCTGGAACTTGAAGATGTTGAGTCAGAATAAAGGCAATGTTCTCCGTTCGCTCGGCCCAGTGCTGGGCGTGACGGTCCCAACCCTCCACGTGGGCATGATTTACTCGACGAGTTGCTGGCATCGCGACCCTCATGGTCTGCCATGGATGGAGTACATGCATACTGGACCCCAAAAGATATGGTATGGTATACCGGATACGGAGAGCGCGAGGTTCCGTCGCGCGGTCGAGAGCCTCTGCCCGACGGCCTGTCAGAACAAGTCGATATGGCTGCCGTCGGACATCGCAATGATCCCGCCGGCCTTGCTTCTCGAGCGCGACGTGACAATGTCTCGCATCGTCCAGAGGCCCGGCGAGTACGTCATCGTGTTCCCCAAGGCGTATTCGTGCTCCATATGCACGGGTTACACGATATCGGAGAGCGTTTACTTCGCCACTAGTCCCTGGGTTAAGACTGTTAACTATGTTTTTCAAGAGTTGCGTCAGAGTTGCGAACCGACGATGTTCTCGCTGGAACAATTGCTGATCGCTATAGCGCGCGACGAGGGCGCCTCGCTCACGATGCTTCAACTGGTGCACGAGAACTTCTCCGCTATTCTCTCTGAGGAGCTCGAGAATCGACGGCAGCTTGAAAAGCATGGACTTAAGCCTCGTGTCCTTCAATCCGAAAAAAGAAATGCAGCGGGAGCGTGGAATGTGCACGAGAACGAATGTGAAGTGTGTCGCACGACGCTCTATCTGTCCCGGGTGAAAGGAGTATTTCGCAAGAAATATTCGGTGTGCCTACGACACACTCTGCAAGTTCTCGACAACAAGACCAAGAAAATCGAAAGACGCGAGACGGAAACATTCGAAATGGAGTATTTCTTCACAACGTTCGAATTAAAAGAATTGATCTCATCAGTAATACAACGCTTAACAAAGCAACCTGAAAAGAAACAACAAGACATTATATAA
Protein Sequence
MKTKVQAQRKFAQGAYVPPSANIINTVINRRVNNSNGKPNRYFFRHNTSAGRLLDSISFEGIHTHKPVVVLERLENHQFQQVDNEPDDASDILIPINTVPTKTQVTAVSRRLPSLRNAATRNSSCLCSRSRVEKKKIISKKKPIKHNYPLKRIRRKPTRNRKFYMKLRSARPASTVDTDFSIEDDKPLMFYTKKTKRIIKKQEKTQKVPLMTNKEIPQMKQAAPNIQSTNVATDASQSETASQTQPQTVRAGVSQTGSVLQPRSQTMRAGVYQSVPQSRSHTMRAGVYQSPQSRSHPMRTGVSQSVAQSRLHTMRAGVYQSVPRSRAHSMRAGVYQSVPQSRSHTMREIPGVCPPERVQTYRRLKRFRTEAAQLRVAQNARASQFDSIKESKPQPVIEIPEEDMADDSCPVNSKSCALPLETKAQSLPQNKMEISEVCAPKLEKSLSPKSTLRTESGSQLQAVPTEVPEVNAGLKTYPPMACAIKFETEPQSHSQTPMDIPEACVPKSEELSSKSTNRSESKDHSQVIQTNEKHQRVSVAVPSPDYTNKNVFQTNDTSFYGNNGIANWMCNSRAVNEVPNDDTAEVKEENGTASDNCHPLETKANGADDGAVAGPSTTDNAEECESPTPISGKKQNGKKKTRTTRRKKKIGPTKNSDAKILEAPVFRPNEEEFRDPIAYFQKIMPEAAKFGLCKVIAPAGFKPECTITDSIRFVVTNQYIARLYSRWGPVTRELCALRSFLTSQNITFSHAPLMEGLEVNLPKLLHFVQRQGGLKANVKSRTYVDTRKWNRLAEELNYTKMNNPAKKLDQIYVKYLLPYDALTQKERQDLAEQMDKRWSKRNDKLLQRAQNPLHRQRRLLGESDSSDDDDCEENQQIAAALNEAEECVIRGRVMNLTNFKKIAKTALQIFFPLKPTTAEVEAQYWKLVLLGNEHVCVNTASIDTGTEGYGFSKNKNEPYGKHPWNLKMLSQNKGNVLRSLGPVLGVTVPTLHVGMIYSTSCWHRDPHGLPWMEYMHTGPQKIWYGIPDTESARFRRAVESLCPTACQNKSIWLPSDIAMIPPALLLERDVTMSRIVQRPGEYVIVFPKAYSCSICTGYTISESVYFATSPWVKTVNYVFQELRQSCEPTMFSLEQLLIAIARDEGASLTMLQLVHENFSAILSEELENRRQLEKHGLKPRVLQSEKRNAAGAWNVHENECEVCRTTLYLSRVKGVFRKKYSVCLRHTLQVLDNKTKKIERRETETFEMEYFFTTFELKELISSVIQRLTKQPEKKQQDII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01506125;
90% Identity
-
80% Identity
-