Vata007536.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990580.1:2221209-2235473[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.6 5.8e+02 1.6 0.4 1 23 182 204 182 204 0.84 2 13 0.0061 0.47 11.3 0.4 1 20 353 372 353 374 0.94 3 13 8.5 6.6e+02 1.4 0.3 3 12 381 390 380 401 0.82 4 13 0.97 75 4.4 2.7 1 23 409 434 409 434 0.91 5 13 1.2 90 4.1 3.9 1 23 669 691 669 691 0.97 6 13 0.056 4.3 8.3 0.1 3 23 698 718 697 718 0.97 7 13 0.61 47 5.0 2.4 2 23 802 823 802 823 0.95 8 13 0.00042 0.033 15.0 0.2 3 23 840 860 838 860 0.96 9 13 4.2e-07 3.2e-05 24.4 3.7 1 23 866 888 866 888 0.99 10 13 4e-06 0.00031 21.3 1.5 2 23 894 915 893 915 0.97 11 13 0.00081 0.062 14.1 1.5 2 22 922 942 921 942 0.94 12 13 1.5 1.2e+02 3.8 0.8 1 20 947 966 947 970 0.93 13 13 0.0003 0.023 15.5 0.7 3 23 979 1000 978 1000 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAGAGAAGTAAAAAAAGATGTAGAAAATCAAAACTAGTGCCGCGGGAATATTTGGACTCAGACGATGAAAATATCGCCCAAATGCAGAATGAAATCGAGGAGACAATAGCCAAAATTGACGCCCAATCAATACTAAGGAAACTAGAACCAAATTATTTTTCATCGAAGCCACTGGAATTTTCCGTTAAAGTGGAAGTAGAAGAATTTGACGAACCAATAGTAGAAGATAATCAATTATCAGATGATTTAAATATAAAAATTCATTCAATTAGAAGCTTAAGCGACACTACAAGTACGACAAATCGTAACTGTGAGTACAGATTAAACGAAGAAGTCATAAGAGATGTATTCGATGTAATAAGCAAGAAAACTACAAGTATTGTCGATAAAATGATTGAAATATACATGAGGAATGATTTCGGCAGACGGCAAGCTCATATAGACGAAAGTAACATAGACAAAAAGTTACAATTGAATCTGAAGAAGTGGAAAATATGGTACGAAGCGGCACCACGTTTTAGAGATGCCCCTGGTATGTACATCTGTTATGTCTGCGGGATTGGTTGGTGGCACTTATCAGACTTCAGAGAACACGTGAAGAAGCATGACAGTCTAAATTATGGTGTAGAATTCTCTTTCCAAGAGTTCAAGATAATAGCGTACAATAAACCCGTTAAACCTAGAAACGTACCGATTGAATCCGATTGTTGGAAGTGTGGTAAAGATGTATCAGCTCATCAGGGAGTTGACTACAAATGTATTGGGTGCCAATTGAAAGTACATTCGTGTAAAATGTTGAGCTTACACGAAAGCGAGTGTAAGAAATACAAATTCCTGCTCAACAACACTGGTGTTGATACGTCCAAGATGTACCGCTGTCCGTTATGTTCGTTCAAACATTGGGTTAAAGAACAAGTTCGTAAACACCTTAAATCCCAGCACAGTGTAAGATCAGACTTGCCTATATATTGGACGAAAAAAACATGTCAGAAATGCAATGTAAGCTACAACGACCACAGAGTCCACGAATGCAACCAAAGGCCTATGATTTATAGTTGTCAGTTTTGTGGAAAGAATTTTCAGAGTAAATGGGTTCTTAATTTGCACTTGTTGAACTCAAAGGATAATGTACTGTGCAGGATATGTGGAAAAAGACTGCGGAGAGGGTGCATGGAGGCAGAACACTTATTAGTACATTCCCGTAATTATAAAATGGTGTTTAAATGTAACTTCTGTGAGGAGTCATTATATTACACTGACTATTCCTCGTTGACCACTCACAAGAATAGATTTCACAGCGATGTTGATGAGGAGAAACCTTTCTTTGAGAAGGTTATCGTGCCAAAAAAAGTATTGAACAGACAAGAAATCATTGACCTCACCGAAGCGACGGAACCAGATACAATGACAGACAGACCAGTTAATATAGATGAAAATCATGATAATGAAGCTCAGAACGATTATGTCGACGACGAATTTGGTATCAAAGTTACAGTCATAGACAAATCAACGGTACAAAGAATTATTAACGAAACTCAAAGGGAAACAAGTGAAGGGAACATCGATACCGCAGAAACAGCTGTCGTTACACAACGAACACTGAAAAACATAGTCGCTGTAACGAAAAATCTTCCACAGAAAACCTATACGAACAAGAAGAAAATCAATAGAGACAGTGTTGCCACATCAAATATGAACGAAGAAATTCAAATAAAGAACGAAATTCTAGATGAATTTGAAGTTCCGGATGCTATGAATGTCGTTAAACAGGAGATTGATAACGATTCGGCTGGCAATGAATTGGTTGATTTTGAAACGATCGTCAAGACCGAGGTTGACGATGTTGTGATGAAATCTGAAGAGATCTGTGATATTAATGAGCATTCTGTTACTTATGAAGAGGTACCACCTAGGCGAACTAGAGGCAAATACAAGAAAAGAAAAAAGGCTCTCGTGAGACTGACAGAAGTAAAATATCCGAAAAACGTGTCGGACAGATACACGTGCACCAAGTGCAACACGACGTCGCAGACGCTGATGAAGTACCTGCAGCACTTCAAGAGTCACAACTACGAGGACTCGGCCTGCCCGAAGTGCTTCAAGCAGTTCCCCCTCGGACAGGCTCTCCTCCGTCACGTGAATGTCCATATCAAGAACAACTACGTCATGATACACGCGATACGCGACAGCAAAGCGGAAACCGACTGCAATTACCAGTGTAGAAAGTGTAAAATGACGATGGGGGTGGGCGACTTCTTCCAGCACTGGGAGACCCACTTGGAAATCCACGATATCGCTAACCAGGATAACGTCTACTACGTTGATATGGACGAGAAGCCTCTGTTGAAGAATATGCTAGCGGCGCTGCAGTCGGCGGACGCGGGCGGCCCGCAGCGCACGTGCGCCGTGTGCGCCAAGCGCTTCGAGCGCCGCAACGACTGCAAGCGGCACTACATCGAGCACCTGCTGGGGGACGCGCTCGCCGAGCGCGCGCGCCGCGGCTGCCTCGCGTGCCAGCTGTGCGGGCGCGGCTTCCAGCGGGGGGACGCATACAAGCGCCACATGCGCGACCACGCCTGCCTGCCGGTGTACAAGTGTGAAATTTGCGACAAAGCCTTCAGCGACTCGAGCAACTTCTGCAAACATAAGAAGGTGCACAACATGTCTGTGGTCGTTTGCGACATCTGCAAGAAGAAGTTCACCAACAAGAAGTTTCTCATTAAACATATTAAGATGCATCAAGTTGTCAAACCGATCAGCTGCAACACCTGCAACAAACTGTTCTACACTCAGTCGAGTTACAATAAGCACTTGAAGAGAAATCGTTCCCGGTTCAAGTGTACCACGTGCTCGTTATACTACAGCTCGCTGAAGGAGAAGTGGGAGCACATGTGGCAGGTTCACAACGAAAGAAAGTACGAAGCGGACTGTCCGCTGTGCAAGAAGCCGTTCCGGAAGTACTCGGACGTGAAACAACACCTCCGGGAGCAGCACGAGGAGAAATATTACTACTATAGATCTCGATTAAACACCGGCGTTAAATCGGGACGACTCAAGGATTTACAGTACTTATAA
- Protein Sequence
- MEERSKKRCRKSKLVPREYLDSDDENIAQMQNEIEETIAKIDAQSILRKLEPNYFSSKPLEFSVKVEVEEFDEPIVEDNQLSDDLNIKIHSIRSLSDTTSTTNRNCEYRLNEEVIRDVFDVISKKTTSIVDKMIEIYMRNDFGRRQAHIDESNIDKKLQLNLKKWKIWYEAAPRFRDAPGMYICYVCGIGWWHLSDFREHVKKHDSLNYGVEFSFQEFKIIAYNKPVKPRNVPIESDCWKCGKDVSAHQGVDYKCIGCQLKVHSCKMLSLHESECKKYKFLLNNTGVDTSKMYRCPLCSFKHWVKEQVRKHLKSQHSVRSDLPIYWTKKTCQKCNVSYNDHRVHECNQRPMIYSCQFCGKNFQSKWVLNLHLLNSKDNVLCRICGKRLRRGCMEAEHLLVHSRNYKMVFKCNFCEESLYYTDYSSLTTHKNRFHSDVDEEKPFFEKVIVPKKVLNRQEIIDLTEATEPDTMTDRPVNIDENHDNEAQNDYVDDEFGIKVTVIDKSTVQRIINETQRETSEGNIDTAETAVVTQRTLKNIVAVTKNLPQKTYTNKKKINRDSVATSNMNEEIQIKNEILDEFEVPDAMNVVKQEIDNDSAGNELVDFETIVKTEVDDVVMKSEEICDINEHSVTYEEVPPRRTRGKYKKRKKALVRLTEVKYPKNVSDRYTCTKCNTTSQTLMKYLQHFKSHNYEDSACPKCFKQFPLGQALLRHVNVHIKNNYVMIHAIRDSKAETDCNYQCRKCKMTMGVGDFFQHWETHLEIHDIANQDNVYYVDMDEKPLLKNMLAALQSADAGGPQRTCAVCAKRFERRNDCKRHYIEHLLGDALAERARRGCLACQLCGRGFQRGDAYKRHMRDHACLPVYKCEICDKAFSDSSNFCKHKKVHNMSVVVCDICKKKFTNKKFLIKHIKMHQVVKPISCNTCNKLFYTQSSYNKHLKRNRSRFKCTTCSLYYSSLKEKWEHMWQVHNERKYEADCPLCKKPFRKYSDVKQHLREQHEEKYYYYRSRLNTGVKSGRLKDLQYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01508478;
- 90% Identity
- iTF_01508478;
- 80% Identity
- -