Basic Information

Insect: Vanessa atalanta
Gene Symbol: -
Assembly: GCA_905147765.1
Location: LR990575.1:2551036-2556192[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.3e-06 0.00033 21.2 3.7 1 23 286 308 286 308 0.98

2 11 0.07 5.4 8.0 3.3 2 23 411 433 409 433 0.89

3 11 0.00011 0.0088 16.8 1.3 1 23 437 459 437 459 0.98

4 11 0.00031 0.024 15.4 0.6 2 23 481 503 480 503 0.93

5 11 0.061 4.8 8.2 1.2 1 23 507 530 507 530 0.97

6 11 0.59 45 5.1 0.9 2 23 553 575 552 575 0.89

7 11 7.5e-06 0.00058 20.5 2.7 1 23 585 607 585 608 0.96

8 11 0.0025 0.19 12.5 1.3 2 23 624 645 623 645 0.96

9 11 0.0066 0.51 11.2 0.8 1 23 651 673 651 673 0.94

10 11 0.37 29 5.7 3.1 1 22 679 700 679 703 0.90

11 11 0.095 7.3 7.6 0.5 2 23 753 774 752 774 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.3e-06	0.00033	21.2	3.7	1	23	286	308	286	308	0.98
2	11	0.07	5.4	8.0	3.3	2	23	411	433	409	433	0.89
3	11	0.00011	0.0088	16.8	1.3	1	23	437	459	437	459	0.98
4	11	0.00031	0.024	15.4	0.6	2	23	481	503	480	503	0.93
5	11	0.061	4.8	8.2	1.2	1	23	507	530	507	530	0.97
6	11	0.59	45	5.1	0.9	2	23	553	575	552	575	0.89
7	11	7.5e-06	0.00058	20.5	2.7	1	23	585	607	585	608	0.96
8	11	0.0025	0.19	12.5	1.3	2	23	624	645	623	645	0.96
9	11	0.0066	0.51	11.2	0.8	1	23	651	673	651	673	0.94
10	11	0.37	29	5.7	3.1	1	22	679	700	679	703	0.90
11	11	0.095	7.3	7.6	0.5	2	23	753	774	752	774	0.97

Sequence Information

Coding Sequence: ATGGAGTTTCAAAATACAAAATCCTGTGAATTCGATGAAACGAATGAGATGGTATTGTCAGATGATCTGAATATTAAAGAAGAAATAACCCACGAAATAACAGTTGATATAAAACCGGAAAATGATGACAGCTACAGCAATGATGATAATCCATTTGAGAATATACAAGTTGAGATTAAACAGGAATTCATCACTCCAAATTATCCAGATAAACTACTCGAGATATCATCTATCACAAAGAAAAGAGAAGCTGAACTACAACACACAGTAATGCAAATAGAAAATGAAATAAACGAGTTAATATTACCTAATACAGATGACAATATTAAAATGGAGAAGCAAGACGAGGTTTTGGGTTATGAATATCCGACTATTGATGAAGGCAGCATGGATAGTGAAGAGGCACACGCATTGAACAATGTTGAGGCTTGTTTACAGGATGAAATTAACATAAAACCTGAAAATGATGTTTATGAGGACACCACAAAAGAAGAATTTGACAAATTAATAAAGGAAGAAATGGATTTGACAGTAACAGAAACTCATTTAATATCAAACAAAGTAATTAACACAACATCAACCATCACAAATCCTCAGGATGGGGTGATACAGTCACAAACTACAAAAACTTTAGTTATGGAAATTCATCCTATGGTTCAGGGTATCAATGTTTCATCGTTGGGTAGAATTAATAATCCTGAAGAAATATTACCAACTTCTTATAGCAATGATGACAATCTTACAATGGAATATGACGATTTTCAACTAAACTCTATAACTGGCAATGTATTGTCATTAGAGCAGGAAGCATATGGCTTATTAAAAGCAGGTCGCTGTGATGTCAACGACAAACGATTCAGCTGCAAAAAGTGCGATAAATCATATAAGAAATCGAAATATTTGAAAGAGCACATGCAAGTGCACAAGTCCATAGAGAATAGAGCAATGGGAATTATTAAAGGCCTTAAAACGAGGATGGAGAACATGAAGAAAAGGATTTGCAACGATCTCAAGAAAGACGCAAATAAAGCTATTGATAAACATACGTTTGAGAATAAAAAGGCAAGAATGGAAAGATTGGAGAATCGATCGCGAATCAAGGAGGAGGTTGTTATAAATATGAAGAAGGAAGGTTATGAATGCACTTGTGGACAGATATTCAAAAGAAAAACTAGGATGTTGTCTTGTTTACGATCTCACGACATTTATGCAGACACAGAATCCTGCTTTTCCTGCATATCTTGCACCAAACAGTTCAAAGACAAACAGGAGTTAGCGTTACATCGTAAACGGCTGCATCGCAAACGATTCCCCTGTAAATTCTGTCCAACTGACTACAGCACCAGAAAAGATTTATTCAAGCACCTTCAAATACACCAAAAAGTTCAATTGATGGAGTACAAAGTTATTTCGGAAGTAGTTAAAGGGAAACAGAAGCTAAAATGTTTTATGTGTTCCAAAACATTTTCGGAACTATCAGAATTAAAAATGCATGTGATGGAGGATCACGAGGAACCGTACATTTGCCCACATTGTAAAGGAACTTTTCCGAAAATTATCGATTTTGGAAACCATACGAAAACGTACCATCCAGAGGTTGAAGGACAATCTGTTTTGGATGTTCTTGAAGCGTTTTCAAAATTAGTGCAAGCTTGGAAATGCGAGGAGTGTAAATTACAATTTCATGAGGCCGACAAATTTGCTATGCACCAGGTAGAGAAACACAGTCCGGATTTGAAAGTAAAGGATCAGTTCCAGTGCTCCGATTGTCGAAGAGTTTTCGTGAGCCAGAAAGGTTTGACGTCTCACAGAAGAATTCACCACAACACGGGTAGCACAGAGGAATCCGAGACCATCGAGAAGGGTGTCATGTGCGTTGAATGTCGGAAGATATGTAAGGATATGACCGCTCTTACATCACACATGCGTTTACATTCACCAGAACGGAAGTATCCTTGCAAGTTTTGTGATTTTCGTTTCTCAACACCAGAGAAGAGAAAGATTCACGCTGAACTACATACAGGCGACATGAAATACGTGTGCTTTATATGCGAGTATCAGTGCAGTTCGGAGAATCGGTTGAAACAGCACAAGATGTCCCTGAAACACGCAAACATGAAGGAGTTCCTATTGACGGGTAAACCGTTAATCGAAGAACAGTCGACATCGAAGGAGTCAAGACCTGGAGAAAAGTACGCTAAAAAGAGGAAGCAAAGTAAAAGCACGCCGTCTCTCTCGGGAGATGAGGGGACTTCGACGTGCGAAGTCTGCGGTGACAAGTTTCCAAGCGAAAAGAAAATGTTAGAACATAAACAAACTCACCCGTTCATTGAATTCCCCAATGAAGACACGCCTACTAGAATATTCTTTAAGTAG
Protein Sequence: MEFQNTKSCEFDETNEMVLSDDLNIKEEITHEITVDIKPENDDSYSNDDNPFENIQVEIKQEFITPNYPDKLLEISSITKKREAELQHTVMQIENEINELILPNTDDNIKMEKQDEVLGYEYPTIDEGSMDSEEAHALNNVEACLQDEINIKPENDVYEDTTKEEFDKLIKEEMDLTVTETHLISNKVINTTSTITNPQDGVIQSQTTKTLVMEIHPMVQGINVSSLGRINNPEEILPTSYSNDDNLTMEYDDFQLNSITGNVLSLEQEAYGLLKAGRCDVNDKRFSCKKCDKSYKKSKYLKEHMQVHKSIENRAMGIIKGLKTRMENMKKRICNDLKKDANKAIDKHTFENKKARMERLENRSRIKEEVVINMKKEGYECTCGQIFKRKTRMLSCLRSHDIYADTESCFSCISCTKQFKDKQELALHRKRLHRKRFPCKFCPTDYSTRKDLFKHLQIHQKVQLMEYKVISEVVKGKQKLKCFMCSKTFSELSELKMHVMEDHEEPYICPHCKGTFPKIIDFGNHTKTYHPEVEGQSVLDVLEAFSKLVQAWKCEECKLQFHEADKFAMHQVEKHSPDLKVKDQFQCSDCRRVFVSQKGLTSHRRIHHNTGSTEESETIEKGVMCVECRKICKDMTALTSHMRLHSPERKYPCKFCDFRFSTPEKRKIHAELHTGDMKYVCFICEYQCSSENRLKQHKMSLKHANMKEFLLTGKPLIEEQSTSKESRPGEKYAKKRKQSKSTPSLSGDEGTSTCEVCGDKFPSEKKMLEHKQTHPFIEFPNEDTPTRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00695997;
90% Identity: iTF_01507557;
80% Identity: -