Vata020503.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990578.1:4449713-4451515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.014 1.1 10.2 1.6 1 23 25 47 25 47 0.95 2 16 0.81 62 4.7 0.1 3 23 77 98 77 98 0.92 3 16 0.033 2.5 9.0 0.5 2 23 119 141 118 141 0.95 4 16 0.00019 0.015 16.0 2.6 2 23 147 169 146 169 0.95 5 16 0.00094 0.072 13.9 0.4 1 23 174 197 174 197 0.96 6 16 0.47 36 5.4 0.5 2 23 200 222 199 222 0.93 7 16 0.0017 0.13 13.0 1.3 2 22 229 249 228 249 0.95 8 16 0.0036 0.28 12.0 0.6 1 23 307 330 307 330 0.90 9 16 1.3 1e+02 4.0 0.1 3 23 359 380 357 380 0.93 10 16 0.053 4.1 8.4 0.3 3 23 404 426 402 426 0.95 11 16 0.00032 0.025 15.4 0.6 3 20 433 450 431 454 0.90 12 16 0.015 1.2 10.1 0.3 1 23 459 482 459 482 0.95 13 16 0.0012 0.093 13.5 0.2 2 23 488 510 488 510 0.94 14 16 2.4e-05 0.0018 18.9 4.7 1 23 514 537 514 537 0.97 15 16 0.0001 0.0079 16.9 0.6 2 23 544 565 543 565 0.96 16 16 0.00095 0.074 13.9 3.0 1 23 571 593 571 593 0.98
Sequence Information
- Coding Sequence
- ATGCGTAGGCGGAAAAATCTTCAATTACTTTTCAACAATACGACGATAATTCCGTTCAAATGGAGGGGAAAATATCTGTGTTTCTTTTGCAGTAAGGATATAGCTCAATATTCTGAATTACGTAAGCACACGAAATCTCATGGGAATTGCTCGATAGAAGATCATTCCCTGAAAGTATTGAAAGGTGGGCAGAACATGGAAATAAAGATTGATATTTCTGAAATAGGCTGTGAGATTTGTAACGAAGAATTTCCAGCGTTCGACGATGTTTTAAATCACCTTTTCGTCAAGCATAAATTGGAATACGACAAAGATGTCGATATGGCTATAGAAGAATATAAACTTGTTGATCTCAGCTGTAGTCAGTGTGACGATAAGTTCACTTACTTCGGCTATCTCGTCTCGCATATCAATAATAATCACCCAAAGAACTGTTTGATATGTGACAAATGTAATCAGAAGTTCAATAAGAAACGAGATCTTTTTTCGCACATGAAGAATTATCACCGAGAAGGGGGTTACCCGTGTGACGTATGTCCTCAGAGTTTCAGCTCGCTAAACATACTGAGGAAACATAGAAATAATAGTCATTTAACGAGATGCAACGTTTGTCATTTAAGATTACCTTCAGCGGTTCTCAAACAGAAACATATAGAATTAGAACATCCGGACAATGGTTCGTTGCAGTGCGATATTTGTTACAAAGACTTCCATACGAAACAAGGTTTGAAAATGCACTTGCGGAAATGTAAGGGAGACATTTTCGATATAGCCATAAAGAAAGAAGATTACGACGCCATGGATTTGGACAGCAACTATGAAAACGTAAAACGTCCAAGCGTCAAACAGATCAGAGAAAATATTGTAACAGTCATAAACATGTCAACAGCGATACCGTTTAATTTTTATAAAAATAAATTCAATTGCTTCTATTGCTCGAAAGATTTCCCTGATTCCGATTCGATGAGAGAACACACGGTTTTAGAACATCCAATATGTGATGTTAAAGAGAAATGTATCAGAAAATGCAGGGAGTCGGTTGCATGCGTTAAAATAGATATTTCATCTTTAGCGTGTAAGGTTTGTTTCGAATCGATGCCTGATTTGGAGACTCTGTTAGACCATCTTATATCGAAACATGAGGCTAATTATGACAAATCAATAACCACGTGTTTGCAGCCTTATAAATTGGTCAAAGATCACATGGCCTGTCCGAATTGTCCCAGCGAAGTGTTTAGATTTTTCGGCACATTATTAAAACACATGAACAACAAACACACGAATAATAATATCATCTGCGTTTACTGTGGACAAACATTTCGACGAGACCAAAATTTGAGAGTTCATATATGGAGACATCACAGAGACGGTAGATTCAAGTGCAATATATGCGGAGCTGATTGTAACATACCTTCGAGGTTGTATATGCACATGGCTAATGCACACGGCGTTAAAGCGGCTAAATGTCCGAAGTGTACGGAAGCGTTCCCCACACAGTATCTCAGACAAAAACATTTAATAGAAGCACATGATTCCGGCCACAAATGTTCCTACTGTGGTAAATTATTCACGCGTAATTCGTTCATGCGTGATCACATACGAAGGACGCATTTGAAAGAGAAGAACGTGGAATGTTCCATATGTAACATGAAATTCTTCAATAATATACTTTTGCGTCGTCATATGGTGAAACACAGCGGGGAGAAGAATTTCCATTGTGACATTTGTGGGGAAAGATTCTATTGGAGGAAGAGTTTACGTACGCATATGTCCAGACATAATAAGCATATTAATTCTGTGTAA
- Protein Sequence
- MRRRKNLQLLFNNTTIIPFKWRGKYLCFFCSKDIAQYSELRKHTKSHGNCSIEDHSLKVLKGGQNMEIKIDISEIGCEICNEEFPAFDDVLNHLFVKHKLEYDKDVDMAIEEYKLVDLSCSQCDDKFTYFGYLVSHINNNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYPCDVCPQSFSSLNILRKHRNNSHLTRCNVCHLRLPSAVLKQKHIELEHPDNGSLQCDICYKDFHTKQGLKMHLRKCKGDIFDIAIKKEDYDAMDLDSNYENVKRPSVKQIRENIVTVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVLEHPICDVKEKCIRKCRESVACVKIDISSLACKVCFESMPDLETLLDHLISKHEANYDKSITTCLQPYKLVKDHMACPNCPSEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGADCNIPSRLYMHMANAHGVKAAKCPKCTEAFPTQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMSRHNKHINSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198043;
- 90% Identity
- iTF_01078425;
- 80% Identity
- -