Vata007521.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990580.1:670913-688866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.5e-05 0.0019 18.9 4.1 1 23 21 43 21 43 0.97 2 16 0.0023 0.18 12.6 6.5 1 23 49 72 49 72 0.98 3 16 0.0018 0.14 13.0 5.0 1 23 78 100 78 100 0.97 4 16 3e-05 0.0023 18.6 1.3 1 23 106 128 106 128 0.97 5 16 0.0015 0.12 13.2 7.0 1 23 134 156 134 156 0.98 6 16 4.5e-05 0.0034 18.0 0.9 1 23 163 186 163 186 0.94 7 16 2.4e-05 0.0019 18.9 2.1 2 23 195 217 194 217 0.94 8 16 0.0024 0.18 12.6 0.7 2 23 224 245 221 245 0.93 9 16 0.00015 0.012 16.4 2.1 1 23 251 275 251 275 0.96 10 16 9.4e-05 0.0073 17.0 2.2 1 23 281 303 281 303 0.98 11 16 1.3e-05 0.00098 19.8 1.0 2 23 311 333 311 333 0.96 12 16 0.18 14 6.7 0.2 1 23 339 362 339 362 0.96 13 16 0.014 1.1 10.2 2.2 2 20 369 387 369 389 0.96 14 16 6.3 4.8e+02 1.8 5.1 1 23 677 699 677 699 0.91 15 16 6.2 4.8e+02 1.9 0.2 2 15 710 721 709 730 0.69 16 16 0.031 2.4 9.1 2.1 1 23 852 874 852 874 0.98
Sequence Information
- Coding Sequence
- ATGGCAAAGGACGATACAGATCCGAAGAAAAGTGTTAAAACCAAAACTAATTTTGGGGATCATAAATGTAAAATATGTACTAAGAGATTCTCGGACAAGTCGGGGCTGGCACATCATGTGCAGCTCCATTCAGCAGAACGTCCATATTCCTGCCAACTGTGCCCGCACACATGTAAAACTAAGAAGTATTTAAGTAAGCACATAAAGCGAGTCCATAATGTGGCAACAGAACATGAGTGCAGCTTCTGTGGCCGGAAGTTTCATTACAAGAGTCTCCTGGATAACCACATGTACATACATACAGATGAGAGACCCTTCAAGTGTGACGTCTGTGGGAAGGGCTTCAATTCGACCTATTCGTTGAACACACATAAATATATACATACAGATATAAAACCGTTTAAATGTCAGTTCTGTGACTATGCGTGTCGTGATAATTCGACGTTACGAAAACATCACGAACGACATCTGGGCATACGGAAGCATTATCAGTGCAAGATGTGTGAAAAGAGTTATAAAACGAAGAGAGTGCTGAAAGCCCATATAGCTGAGACTCATTTGGACATGGAAGTTAAGAAAAAACCATGTAGTCACTGTGGGAAAATGTTCAAATCGAACACCACCTTGAACTCTCATGTTAAATTAGTCCACGAGAAGATATATTCGTGTAAATGTGACATATGCGGCGTGGAAATAAGTAATAAGTACAATATGGCGGCCCATCTCACGAAACATGTCCATTTTAAACCCTTCAAATGCAGCTATGAGGGGTGCACGAAGAAGTTCAAGGATAAGGGTACCCTCAAAAAGCACTCTTTAATTCACTACCCGGATCAGCAGTATGTCTGTACGTTGTGCAAGAAACGCTTCACGCGTATCAATCGCTTGAACGTCCACATGAAACAACACAGAGCTAAAGAGAAGAGCGCTGTTTGTGATTATTGTGGTACCAGTTTTTACAGTAAAAACTACCTCCGATCTCATATAATGAAGAAGCACTGCGTCAGGGAGCAGTTCCAGTGCGACGCGTGCGGCTTCCTCACCTACAACAAGCCGAGTCTCGTCATGCACATCAAATACGGGCACGCCTTCGAGAAGGACAGACAGTGTAAGATTTGCAAGAAAAACTTCAAAATGCACAAATATCTCAAGTTGCATTATTGGAATACACATTGTATCAAATACAACATGTCTTTGAGGAGGCCGAGACCGAAGAAGATTAAAATTATCTTAAAAGAGGACCACAACGATATGAAAGAGATAGAACTTTTGCACGAAGTCAAAGTTGAACCTTTAAGCGACTCGGATCCAGATCAAAAGTCAACGGAGTATTCGGAAGGTGTATTTTCGGAGGATATATCGAGAGCCGTTGAGAATAAGGCGAAGAAGATAACTCCAGTGACTCGCTTTGAAGATTTCTTTATAGAACATATTATGCGACCTGACACGAACGTTCAAGATTCGGAGTATGATACGAAATGTTACAATGAAGCCAGGACTAGCATAGATAACATCATTAAATGTAAGACGGGGACGAACTCATCGGTTGGAAAGAGACAGCATCGTATGGTAGTTGAAATAGACATCGCAGGAGAACCGGAAGAAGCTAAAGTTGAAATCAACGAAGTCACTATAACACAGCCTAATAATATTTACAACACAATACTAGAAAATAGGAATGGAATACAAAACGAACAAGAATCGAATTCATGTGTCACAAATCTAACCAAATCAAATGGAATCATTGAAACTGCAAATGATTCCAAATCAATACTAAATGATAATTATAATAATGATGAGTCTGTTGAATGTGAAGACACAAGTGAAATACAAAACGATAAAATATCGACACCGTGTGAAGCAAATCAAACCAAATCAAATGCAAATATCGACACTATGGATGTGTCTATAACGAAACTGAATGATGATTGTAGTGATGACGAAACTATTGGAAATGAAGATTTAAATGATAGTGAATATGTTGATAATGAAAAAACATCGCAATCGAAAAGGATTAAATTCAATTCCCATCAATGTTACGTTTGTTTCAAGCTGTACGAAACGCGAGAGAAATTAATAAATCACTGCAAAGAACATTTCGACGTGTGCAATGTTAATATGCTAAAGAAATGTCCTCTATGCGACTACGTGACCAAATTAAACCTACCAAGACATATGCTTTTAGTTCACAAGTTAAATATAAAACTACCTTTCGGCGGAATAAAAGATAGAAAAGATAACAATAATGGTTCAAGATTCTATTACAATATAAAAAATGACAATTTCACCGAAATAGAAGTCATACCGAGCGTCAAGAATCTAAATAAAAGGGCATACGTCGCTCTTGATAGGAAAAAACGCGAATTAGACAATAAAGGTTTAACGAAAACTAAGTTGGTTAAGAAAGATGGCGAATGGGTCGTGGAAAAGGAAAAAATCAATATATCGAGCAATATTATTGTGCCAAAGATTAATTTACCAAATAGTGAAGATTATTTGAGCGAAATGAAGCTCCTGTACAGGAAAGCAAAAAACAACGGTAAAAAGATGCTGTTTCCGTGCGATAAGTGCGTGAAAATATGCCAAACGATGAGCGCTTTGAAGTTGCACTCGAGGAAACACAATCCAAACGCTAAGCCGTTCAAGAAGAAAGTATGGAAGCATAAGTTGAGTGAACAAGAATTGTTAAAGCTGAACGACAAACCACAGATAACAAATCCCAATCGATACGAGAAACCGAAACCGATTGTCAACAAACACAAGTGCGATCCGAAATTGAAGGAGTTCTACGAGAATAATATTAAAGGTGGCGACATACAATTCTGGCAGTTTCTGAAGATATTCAACAAAATGTCGCGAGAAAATGTCAACGATTTCGCCGATTTGGAAAATCGTAAGGAATTTGGTATACATTTCAGTTTGCCTGAGACTAAAGTTGAAGAGAAAACGAAAACGAAAGGCTTAAGTGAAGGAAAAACAATTAAAACTAGAACAAGGAACGCGTTTAGACGAACTATAATGATTAGTAAGAGGAATCACGAGAAAAGGAAAGCTATGATTGACGTTTTAAGGCGGAAGTTATCAAATACAACAGCCGGGACGTAG
- Protein Sequence
- MAKDDTDPKKSVKTKTNFGDHKCKICTKRFSDKSGLAHHVQLHSAERPYSCQLCPHTCKTKKYLSKHIKRVHNVATEHECSFCGRKFHYKSLLDNHMYIHTDERPFKCDVCGKGFNSTYSLNTHKYIHTDIKPFKCQFCDYACRDNSTLRKHHERHLGIRKHYQCKMCEKSYKTKRVLKAHIAETHLDMEVKKKPCSHCGKMFKSNTTLNSHVKLVHEKIYSCKCDICGVEISNKYNMAAHLTKHVHFKPFKCSYEGCTKKFKDKGTLKKHSLIHYPDQQYVCTLCKKRFTRINRLNVHMKQHRAKEKSAVCDYCGTSFYSKNYLRSHIMKKHCVREQFQCDACGFLTYNKPSLVMHIKYGHAFEKDRQCKICKKNFKMHKYLKLHYWNTHCIKYNMSLRRPRPKKIKIILKEDHNDMKEIELLHEVKVEPLSDSDPDQKSTEYSEGVFSEDISRAVENKAKKITPVTRFEDFFIEHIMRPDTNVQDSEYDTKCYNEARTSIDNIIKCKTGTNSSVGKRQHRMVVEIDIAGEPEEAKVEINEVTITQPNNIYNTILENRNGIQNEQESNSCVTNLTKSNGIIETANDSKSILNDNYNNDESVECEDTSEIQNDKISTPCEANQTKSNANIDTMDVSITKLNDDCSDDETIGNEDLNDSEYVDNEKTSQSKRIKFNSHQCYVCFKLYETREKLINHCKEHFDVCNVNMLKKCPLCDYVTKLNLPRHMLLVHKLNIKLPFGGIKDRKDNNNGSRFYYNIKNDNFTEIEVIPSVKNLNKRAYVALDRKKRELDNKGLTKTKLVKKDGEWVVEKEKINISSNIIVPKINLPNSEDYLSEMKLLYRKAKNNGKKMLFPCDKCVKICQTMSALKLHSRKHNPNAKPFKKKVWKHKLSEQELLKLNDKPQITNPNRYEKPKPIVNKHKCDPKLKEFYENNIKGGDIQFWQFLKIFNKMSRENVNDFADLENRKEFGIHFSLPETKVEEKTKTKGLSEGKTIKTRTRNAFRRTIMISKRNHEKRKAMIDVLRRKLSNTTAGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01507438;
- 90% Identity
- -
- 80% Identity
- -