Basic Information

Insect: Vanessa atalanta
Gene Symbol: -
Assembly: GCA_905147765.1
Location: LR990563.1:2405291-2409089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0047 0.37 11.7 4.4 1 23 131 153 131 153 0.97

2 13 8.3e-06 0.00064 20.4 1.5 2 22 158 178 157 178 0.94

3 13 0.00028 0.022 15.5 1.9 1 23 209 231 209 231 0.97

4 13 0.0017 0.13 13.1 2.4 1 23 268 290 268 290 0.98

5 13 1.6e-06 0.00012 22.6 0.9 1 23 299 321 299 321 0.97

6 13 3.9e-07 3e-05 24.5 2.5 1 23 327 349 327 349 0.99

7 13 6.1e-06 0.00047 20.8 4.6 1 23 355 377 355 377 0.99

8 13 4.9e-07 3.8e-05 24.2 0.7 1 23 383 405 383 405 0.95

9 13 0.0058 0.45 11.4 4.9 1 23 411 433 411 433 0.95

10 13 1.7e-06 0.00013 22.5 0.8 1 23 439 461 439 461 0.98

11 13 8.4e-06 0.00065 20.3 2.5 1 23 467 489 467 489 0.97

12 13 2.6e-06 0.0002 21.9 0.7 1 23 495 517 495 517 0.98

13 13 0.028 2.2 9.2 0.3 1 20 523 542 523 545 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0047	0.37	11.7	4.4	1	23	131	153	131	153	0.97
2	13	8.3e-06	0.00064	20.4	1.5	2	22	158	178	157	178	0.94
3	13	0.00028	0.022	15.5	1.9	1	23	209	231	209	231	0.97
4	13	0.0017	0.13	13.1	2.4	1	23	268	290	268	290	0.98
5	13	1.6e-06	0.00012	22.6	0.9	1	23	299	321	299	321	0.97
6	13	3.9e-07	3e-05	24.5	2.5	1	23	327	349	327	349	0.99
7	13	6.1e-06	0.00047	20.8	4.6	1	23	355	377	355	377	0.99
8	13	4.9e-07	3.8e-05	24.2	0.7	1	23	383	405	383	405	0.95
9	13	0.0058	0.45	11.4	4.9	1	23	411	433	411	433	0.95
10	13	1.7e-06	0.00013	22.5	0.8	1	23	439	461	439	461	0.98
11	13	8.4e-06	0.00065	20.3	2.5	1	23	467	489	467	489	0.97
12	13	2.6e-06	0.0002	21.9	0.7	1	23	495	517	495	517	0.98
13	13	0.028	2.2	9.2	0.3	1	20	523	542	523	545	0.93

Sequence Information

Coding Sequence: ATGATAGATATCGAGAAAACTTGTCGGACTTGTATGAAAAGCGATGTTTCTTTGGTGGATTTGTTTGGTCCTATTAAAATTGAGAATAATAGTACTTTAAAACTGGCAGATGCGTTAATGGAAGCTACTCCTTTACAGATAGCCAAAGAAGACGGCCTCCCACAAAACCTCTGTGACGAATGTGTGAAAGCATTACAAATAATGCATATATTTAGAACGCAAGCTCTCCATGTCGAGAGTGAATTAAGAAAACTAATTCTTTCAAGTGCTGCTATAAAAAATGAAGAAAATGACTATGACTTAAAAAATGAATTTGATTACATGGATGATTACGATGATTTTAGAATTAATGATGTACTGTCGAATGAAGAAACAAAAGACAAAACCACATACAGCTGCAATACATGTAAAAAAAAGTATACAAACTATGAAAAATATTTAAAACACAAATCAGTCCACGAACCGACTAAATCATGTCCAAATTGTAACAAAAAGTTTTACAGGAAGTCTTTATTAAGGGAACATATGAATAAGAGTTGTGAGCCTAGTGATAGTAACATTGAATCTCTAGGAGCTGACATTGAAGAAGATTTAGACATTAAAGTTAAGTTGGAAGATGAAGAACATAAATGTCCAGAATGTTCTATAACTTTTCAATCACAAAAATATTTACTGTTACATTTAAAAGAGCATAAGAAAACGGATTTGGTGGAACAGAAACTCATAGACTCAATACAAGAACACAACGGAACCATAGACAATCTAGAGGCAGAAATAAAAATAGAAAGTTCCACTGATCAGTTTAAATGTTCACAATGCAATCTTGTATTTGAAAAGTATAGGTCTCTTATATCACACTCGAAGAAACACAAGAATCTTTCTAAGAATGGAATTTTTAAATGCAACTACTGTGATAGAGGATTTTCCTCTAAAGGACCTCTCAAGAGGCATTTGTTACTTCACTCCCAAGAAAGACCATTCAAATGCACGAAATGTCCAAAGTGCTATGTTCGCAGGGATGCTCTTGTTGCTCATATGCGTAAACATAGTGATGTTAAGAGGTACACCTGTGAACATTGTAATAAAGCATTTATCCAGCTATGTACTTTAAAGGATCACATCAGAACTCATACAGGAGAGACTCCATTCCTCTGCTCTGAGTGTGGGAGAGGCTTTAAAAACAGTTCCAATCTGAGACAGCACTTAGCACGTCATTCGGGACTCAAACCATTTGCATGTAATCTGTGTCCTAAGACATTTTGTACCAAAGGCCAAATGAAATGTCACATGGTGTCACACACAGGTGTTCAACCGTACAAATGTAATGAGTGTGGAGCATCTTTCACAAAGGCAAACTCTTTGAAAAAACATAAATTAATACACCTTGGATTAAAACCTTTTGCTTGTGATAATTGCAACATGAGGTTCACGGCGAAGGACCACCTGACGCGCCACGTGCGCACGCACACGGGCGAGAAGCCGTACCGCTGCCCGCACTGCGCGCGCGCCTTCACGCAGAGCAACGACCTCGCCAAGCACGTGCGCGCGCACGTCGGGCAGAACATCTACCAATGCACAGTTTGCCAAGCCAGATTCAGGCTAATGAGAGAATTAAGGCTTCACTACCCCGTTCATTACGCCGGCACCGAATCCGCAGCACTCACCGACAAGGAGGAGCCCTTAGTCATACTAAAAGGATGTTCTGATTCTAACATCGATAATAATATCGATAAAACGGCCACAGACGCACAAATAACTATTACGTTTAATAGAAATATTCTCGATAAAGATGGTACTGGTGATATTACTATAAATATTGGGCCTGAAAAGATTAATTAG
Protein Sequence: MIDIEKTCRTCMKSDVSLVDLFGPIKIENNSTLKLADALMEATPLQIAKEDGLPQNLCDECVKALQIMHIFRTQALHVESELRKLILSSAAIKNEENDYDLKNEFDYMDDYDDFRINDVLSNEETKDKTTYSCNTCKKKYTNYEKYLKHKSVHEPTKSCPNCNKKFYRKSLLREHMNKSCEPSDSNIESLGADIEEDLDIKVKLEDEEHKCPECSITFQSQKYLLLHLKEHKKTDLVEQKLIDSIQEHNGTIDNLEAEIKIESSTDQFKCSQCNLVFEKYRSLISHSKKHKNLSKNGIFKCNYCDRGFSSKGPLKRHLLLHSQERPFKCTKCPKCYVRRDALVAHMRKHSDVKRYTCEHCNKAFIQLCTLKDHIRTHTGETPFLCSECGRGFKNSSNLRQHLARHSGLKPFACNLCPKTFCTKGQMKCHMVSHTGVQPYKCNECGASFTKANSLKKHKLIHLGLKPFACDNCNMRFTAKDHLTRHVRTHTGEKPYRCPHCARAFTQSNDLAKHVRAHVGQNIYQCTVCQARFRLMRELRLHYPVHYAGTESAALTDKEEPLVILKGCSDSNIDNNIDKTATDAQITITFNRNILDKDGTGDITINIGPEKIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080902;
90% Identity: iTF_01078395;
80% Identity: -