Basic Information

Insect: Vanessa atalanta
Gene Symbol: -
Assembly: GCA_905147765.1
Location: LR990565.1:6702418-6718648[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6e-05 0.0046 17.6 0.1 3 23 131 151 130 151 0.97

2 12 5.4e-07 4.2e-05 24.1 1.2 1 23 157 179 157 179 0.99

3 12 3.4e-06 0.00026 21.6 2.7 1 23 185 207 185 207 0.99

4 12 2.2e-06 0.00017 22.1 2.6 1 23 222 244 222 244 0.98

5 12 2.1e-07 1.7e-05 25.3 1.5 1 23 259 281 259 281 0.99

6 12 0.022 1.7 9.6 1.8 1 23 288 310 288 310 0.98

7 12 3.6e-07 2.8e-05 24.6 2.3 1 23 316 338 316 338 0.99

8 12 0.025 1.9 9.4 1.8 1 23 345 367 345 367 0.98

9 12 1.5e-06 0.00011 22.7 1.5 1 23 373 395 373 395 0.99

10 12 0.0012 0.093 13.5 0.3 1 20 401 420 401 423 0.93

11 12 2.2e-05 0.0017 19.0 1.3 2 23 430 451 429 451 0.96

12 12 2.1e-06 0.00016 22.2 1.4 1 23 457 480 457 480 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6e-05	0.0046	17.6	0.1	3	23	131	151	130	151	0.97
2	12	5.4e-07	4.2e-05	24.1	1.2	1	23	157	179	157	179	0.99
3	12	3.4e-06	0.00026	21.6	2.7	1	23	185	207	185	207	0.99
4	12	2.2e-06	0.00017	22.1	2.6	1	23	222	244	222	244	0.98
5	12	2.1e-07	1.7e-05	25.3	1.5	1	23	259	281	259	281	0.99
6	12	0.022	1.7	9.6	1.8	1	23	288	310	288	310	0.98
7	12	3.6e-07	2.8e-05	24.6	2.3	1	23	316	338	316	338	0.99
8	12	0.025	1.9	9.4	1.8	1	23	345	367	345	367	0.98
9	12	1.5e-06	0.00011	22.7	1.5	1	23	373	395	373	395	0.99
10	12	0.0012	0.093	13.5	0.3	1	20	401	420	401	423	0.93
11	12	2.2e-05	0.0017	19.0	1.3	2	23	430	451	429	451	0.96
12	12	2.1e-06	0.00016	22.2	1.4	1	23	457	480	457	480	0.97

Sequence Information

Coding Sequence: ATGTTCGAACAGCAGATTAAGGCTGAGCCTATGAGTTTCTACACACATCCACATATAAATACCGGTCCCCCAACAATAGTCCGTTCAGATTCAAACCATGGGATCATAAATATGAACCAGCACCATCCACAAGAAGATTCCAAGGATAGCCTCATAGTACAACAACAAGTACAACACCAACAGGAGCTGCTGGAACAGCACCAACAACACGAAATGCACGATGATGAGGTAGACAATCTTAGCTTCAAGGGTATGGAAGATGAGGGGGTAGAGATGGATATGGATGGTCGACAATGTTCTCAGGGTATGGGGGTTGACATGGGTTCAGTTCAAACAAAAATGGAAGTTTCAAATGGCGGTCAAGGAATGCCAAGGTCCAAACCTCAGGCCTGTAAGGTTTGTGGAAAGGTACTCTCATCAGCTTCATCCTACTATGTCCACATGAAGCTACATTCAGGAAATAAACCCTTCCAATGCACGGTGTGCGACGCGGCGTTCTGTCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACCGGCGAGCGGCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAAAAGTCCAGCCTCAACACGCACAAGCGCGTGCACACCGATGAGCACATGCGAGCCTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACACACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCGTTCCAGTGTCTGCAGTGCCCGGCCGCCTTCACTTGCAAGCAGTACCTCGAAATCCATAATCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAATCTACACTCAACATACACAAAAGAACGCACACAGGGGAACGTCCATACGCATGTGATATTTGCCAAAAACGATTTGCAGTGAAGAGTTACGTTACAGCACATAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCGAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCGTGCTACGAGTGCAGCGTCTGCGGGCGCACCTTCGTCCGCGACAGCTACCTCATACGGCACCACAATCGGGTGCATCGCGAGAACCACAGCAACGTGTCTGCGAACAGTATCGGCACTATTAACAGCGTGGCCACTAATACGAACAACTCCAACAACGGGAACTACGACTCGCCCGGTGTCTGCGATTTAAGTTTCGTGCCAATGGTGAACCGTTACATGACGTCTCAGGGCACCCAGGTGTCGATGCAGGACACGCAGAGTAAAATGTCCGCCATGTCGCCACAGTCCATCGCCTCAATCTCGTCGCCGCCGCCGCCGCACACGCCCACGCCGCAGCCGCTGCCCGCGCTGCGCCTCGCCGACTGA
Protein Sequence: MFEQQIKAEPMSFYTHPHINTGPPTIVRSDSNHGIINMNQHHPQEDSKDSLIVQQQVQHQQELLEQHQQHEMHDDEVDNLSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQGMPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPLPALRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00843713;
90% Identity: -
80% Identity: -