Vata000347.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990555.1:2809574-2810981[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-12 6.4e-09 35.7 0.1 4 40 41 77 38 82 0.88 2 2 8.1 6.3e+03 -2.7 0.0 28 43 269 285 268 286 0.82
Sequence Information
- Coding Sequence
- ATGTTCAAGGACATGTCTTATGATGAAGAAAAGTTTTTGATATATAAGAAGAATTATGGTCAACCAGTCGATGAATCAGCATCTAAACCAAAGCAACAACGTGCGAAATGGTCCGAGCACCAGATTACTTGTGCTGTGAGGGCTGTACAACGAAATATACTTTCCCAAAGAGAAGCTGCTAAAAGATATAACATTCCACGAAGAACATTAAGGAACCACTTAAAAACTGGCTCGATGGAAAGGAAATTAGGTCGAGCGGCCACCTTAACACCAGAACAAGAAGAAGATTTAGTGGGTAGAATAATACGCTTGGCTGAAGTGGGAATGCCTCTAACACCTAAACTTGTTCGAAAGCAAGCATTTGTTTTTTGTAAAAAAAACAGCATACCTAATCGCTTCAGTGATACTACTTCTACAGCTGGCAGAAAATGGCTGAAACTGTTTCTAAAAAGGCGTCCTCAATTAACTCGGCGAAAAGCCCAAATGATGAACCCATCAAGGGCCCAAAAGCTAAATAAATTTATTGTCAGTGATCATTTTGATAAAGTAAAAAGCTTACGAGAGAAACTTCATATTGAAAATAGACCGGAATGCCTATACAACATGGATGAAAAGAGTTGCCGTATATCACTTCATCATCAGCAAACCGTGTTAGCCCAAAAAGGGATAAAAAGACTGCATCAAATAGCTAACGAACATGCAGAAAGCGTTACAGTAGTCGGCTGTGTAAATGCTGTAGGAAATGCTATTCCACCGATGATTTTGTTTAGAGGCAAAAGAATGAAACCTGAATTTACTGATAATTTACCAGCAGGTTCATTGGTTAAAATGACTGCAAAGGGACACATGAAACTTTTATTGATTTCATTGAACATTTGGCTAAGCACAAAACTTCTGGAAAATGTCTTCTGGTGTTTGATGGAGCGGCGTGCCATCTCGATTACAGCATAG
- Protein Sequence
- MFKDMSYDEEKFLIYKKNYGQPVDESASKPKQQRAKWSEHQITCAVRAVQRNILSQREAAKRYNIPRRTLRNHLKTGSMERKLGRAATLTPEQEEDLVGRIIRLAEVGMPLTPKLVRKQAFVFCKKNSIPNRFSDTTSTAGRKWLKLFLKRRPQLTRRKAQMMNPSRAQKLNKFIVSDHFDKVKSLREKLHIENRPECLYNMDEKSCRISLHHQQTVLAQKGIKRLHQIANEHAESVTVVGCVNAVGNAIPPMILFRGKRMKPEFTDNLPAGSLVKMTAKGHMKLLLISLNIWLSTKLLENVFWCLMERRAISITA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -