Ucar027244.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- nfxl1
- Assembly
- GCA_960531455.1
- Location
- OY482673.1:44420546-44423963[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.6 3.7e+04 -3.8 2.1 15 19 186 190 185 190 0.82 2 20 0.14 3.2e+03 -0.4 0.4 4 10 221 227 220 227 0.95 3 20 5.6e-09 0.00013 23.2 15.1 1 19 235 252 235 252 0.98 4 20 1.6 3.7e+04 -3.8 1.1 5 10 277 282 277 282 0.91 5 20 4.6e-06 0.11 13.9 15.1 1 19 288 307 288 307 0.96 6 20 0.66 1.5e+04 -2.6 0.7 5 10 331 336 331 336 0.90 7 20 1.7e-08 0.00039 21.7 13.6 1 19 342 360 342 360 0.99 8 20 1.3 3.1e+04 -3.5 0.4 1 8 385 391 385 392 0.59 9 20 2.2e-08 0.00051 21.3 11.7 1 18 395 412 395 413 0.96 10 20 0.32 7.5e+03 -1.6 0.4 1 5 422 426 422 431 0.75 11 20 2 4.7e+04 -5.0 2.3 5 10 436 441 436 441 0.91 12 20 0.00014 3.4 9.1 16.2 1 18 447 465 447 466 0.94 13 20 4.7e-08 0.0011 20.3 14.9 1 19 475 493 469 493 0.86 14 20 0.013 3e+02 2.9 6.4 9 18 538 547 536 548 0.89 15 20 0.068 1.6e+03 0.6 4.6 3 11 561 569 551 570 0.85 16 20 0.91 2.1e+04 -3.0 1.4 6 10 632 636 631 636 0.88 17 20 1.9e-06 0.043 15.2 6.1 1 12 642 653 642 653 0.97 18 20 1.8 4.3e+04 -4.0 1.5 15 19 666 670 666 670 0.87 19 20 0.28 6.5e+03 -1.4 21.2 4 18 683 697 681 698 0.93 20 20 0.00011 2.5 9.6 16.4 1 16 749 763 749 769 0.92
Sequence Information
- Coding Sequence
- ATGTCTGAAAAACGTACGCAATTACAGAAGGAGGATACAAATTCCAAAGCTTTGCAGCAAAAATCAAATGGAATGAAACGTTTTGAGCAAACGCACGCAAAGCATATTGCAGCTGCACAAAAAGCGCTCGAACACTTTACACCCAGTTCCGATGAAGAAGATGATGAAGAGGTGGAGCTGGACGAACGTCAAATTTTTGACTCCCTGTATAAACATTACAAACCTACAAACAGCACTGCCACCGATGCCGTTGCCGGCGTAGTCGACTCTAGTCTCGTCCCTCAAAAGTCGGCAACTTTCTTTGAAAACGCTTTGCACTCGGGCGCAGCAACCTGTTTAATCTGTATCGGTAGCATACGACGAGCCCAAGCCATATGGTCATGTAAATATTGTTATTGTTTCTTTCATTTGACTTGCATACAGCGTTGGGCCAAAGATAGCGTTGCTCAATTGAAAGCTAAAGCGAGACAACAACAAAATGATCAACAAGGCTACTACAATCACTTGGGAGAGTTTGTGCCACCAACGAAACGTACACGTGCACTACAATGGAGTTGTCCACAGTGTCGCAAGGGTTATTCCCCCGAAGAACGACCAACAGAGTATACATGCTTTTGCGGTAAAGAGGTTAATCCCAAGCCGGGACCATTTATGCTGCCGCATTCGTGTGGTGAAATATGTGGTAAGCTGTTACAGCCAAAGTGTGGTCACACATGCATGTTACTCTGTCATCCAGGCCCATGTCCGCCGTGCTCGCAGTATGCACAAACGAGTTGTTTGTGTGGTAAATCGGCAAAAAAGTCGGTACGCTGCATAGATAAGGAGTGGAAATGTGATCGAAAGTGTGATAAATTACTACGCTGTGGCGAACATAAATGCAAAGAGATTTGTCATAAGCCCAATCAATGTCCACCATGTACTAGCAGCAGCATGCAGCCGTGCGATTGTGGCAGAGAGGTAAAAAAACGTAATTGCTCCGAACTCCAGTGGAATTGCAATAAAGTGTGCGGTACCAAATATTCATGCGGTGCACACACTTGTAAGCGAGTATGTCACTCTGGGACTTGTGGCGATTGCCCTTTGAGCTTACCACGTTCATGTCCTTGTGGAAAAACTCAAAAAATTGTACCCTGCACTGAAGCTATTGAGCCTTGCGGTGATACATGCCAGAAGCTTTTGTCCTGTGGACAACATACTTGCACGCAGCGCTGTCATCGCGGCGATTGCAATTTGTGTTTAATCATAACGAAAAAGAAATGTCGCTGTGGTATGCATGAAAAGGAGCTACCTTGTTGGAAAAGCTTTACATGTGAaacaaaatgcaaacaaatGCGCGATTGCGGAAAACATGCATGTAATAAAAAGTGCTGCGATGGTCAAACATGCCCACCATGTGACAAAGTCTGTGGCAAGCCACTCGCATGTCAAAAACATAAATGTCAATCGATTTGTCATGAGGGTCCATGTTATCCATGCACGCAGCAATCTCAAGTGAATTGCCGATGCGGCAAGACTTCGAAACGTGTGCCATGTGGTCGTGAACGTACAGCACGTGTTATGTGCATGGAACTATGCCGAATTCCTTCTAAGTGTCACCATCCCAACAAGCATCGTTGCCACAAAAAGGAATGTCCCCCGTGTAATCAAAAATGCGGACTACCAAATACTGATACCGGTTGCGAACATATTTGTGAAGCTAGATGCCATGCAGCTGTTAAGGTTCCTAAAAAAACGCCAGCAAGTGATGGCTGTGCCGCAAACATGTGGGATGTAGGAAAAAAGtttGAATTCAAATCAATGCCACATCCACCTTGCGAGAAACCCGTGAGCGTTAGATGTATAGGTGGTCATGAGGTTGCGGATTGGCCGTGTTGGAATTCAAAACCAACATCTTGCCAACGCAAGTGTAACCGTTTACTACGTTGCGGCAATCACAAGTGTGAACTTGTATGTCATTCTGTACCCGATATGCAAGATATGAAGGAACAAGATGGTTGCGCCCCATGCCGAGAGGGATGTATTGTACGACGTCCTGAAGGCTGTGTACACCCTTGCCCGCGGCCATGTCATCCGCCACCATGTCATCCATGCGACAAAATGataaaaacaaaatgtttctgtGGCTTAACGCAACTCATCTACAAATGTTCTGAATATTTCGCTGTAGAAGGAACAGCAGAAGAAATTGTTGCGCGACAGGAGCGCTTGAAGAGCTGTGGCAACCGTTGCATCAAAAATCTCCCTTGTGGCCATCGCTGTCACACACCCTGTCATCCAGGCAAGTGCCCGAATCCTGAATTGTGTCGTAAGAAAGTACGCATTTTTTGTGACTGCAAACGTTTAAAAATCGAAGTAGCTTGCGATCGATATCGCGCCGGCCAAATATCATTGCCATGCGATGCATTCTGTGTGGAGACACTAGCAAAATTGGTTGAGGAGCAAAAGCGCCAGGCCGAGAAGCAACGTCAATTGGAAGAGGCTAAAAATCGTGCTGAAGTTGAACAATTTGAGAAGAGATTCGCTAAGCGTAAATATAAGGAACGCAAAACGGTTGTGGAAACGACGAAAAGCCAAATAAATTGGAAATTAATTAGCATTTATGGGGGTATTTTTATGGCCATAATTCTAGCCGTTTTGGTGGCATTTTATGCAGAAAGTTAA
- Protein Sequence
- MSEKRTQLQKEDTNSKALQQKSNGMKRFEQTHAKHIAAAQKALEHFTPSSDEEDDEEVELDERQIFDSLYKHYKPTNSTATDAVAGVVDSSLVPQKSATFFENALHSGAATCLICIGSIRRAQAIWSCKYCYCFFHLTCIQRWAKDSVAQLKAKARQQQNDQQGYYNHLGEFVPPTKRTRALQWSCPQCRKGYSPEERPTEYTCFCGKEVNPKPGPFMLPHSCGEICGKLLQPKCGHTCMLLCHPGPCPPCSQYAQTSCLCGKSAKKSVRCIDKEWKCDRKCDKLLRCGEHKCKEICHKPNQCPPCTSSSMQPCDCGREVKKRNCSELQWNCNKVCGTKYSCGAHTCKRVCHSGTCGDCPLSLPRSCPCGKTQKIVPCTEAIEPCGDTCQKLLSCGQHTCTQRCHRGDCNLCLIITKKKCRCGMHEKELPCWKSFTCETKCKQMRDCGKHACNKKCCDGQTCPPCDKVCGKPLACQKHKCQSICHEGPCYPCTQQSQVNCRCGKTSKRVPCGRERTARVMCMELCRIPSKCHHPNKHRCHKKECPPCNQKCGLPNTDTGCEHICEARCHAAVKVPKKTPASDGCAANMWDVGKKFEFKSMPHPPCEKPVSVRCIGGHEVADWPCWNSKPTSCQRKCNRLLRCGNHKCELVCHSVPDMQDMKEQDGCAPCREGCIVRRPEGCVHPCPRPCHPPPCHPCDKMIKTKCFCGLTQLIYKCSEYFAVEGTAEEIVARQERLKSCGNRCIKNLPCGHRCHTPCHPGKCPNPELCRKKVRIFCDCKRLKIEVACDRYRAGQISLPCDAFCVETLAKLVEEQKRQAEKQRQLEEAKNRAEVEQFEKRFAKRKYKERKTVVETTKSQINWKLISIYGGIFMAIILAVLVAFYAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -