Ucar037455.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- stc
- Assembly
- GCA_960531455.1
- Location
- OY482674.1:96252206-96262626[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 4.7e+04 -4.4 1.6 15 19 624 628 623 628 0.81 2 11 0.38 9e+03 -1.8 0.3 4 10 657 663 656 663 0.92 3 11 1.3e-06 0.032 15.6 14.4 4 19 671 686 669 686 0.93 4 11 2.4e-07 0.0056 18.0 13.1 3 19 724 740 716 740 0.87 5 11 7.4e-07 0.017 16.4 20.1 1 19 780 798 780 798 0.98 6 11 0.0002 4.6 8.7 17.7 4 18 846 860 839 861 0.86 7 11 0.037 8.6e+02 1.4 11.5 1 11 901 911 901 922 0.94 8 11 5.9e-10 1.4e-05 26.3 15.5 1 18 928 945 928 946 0.97 9 11 2 4.7e+04 -12.3 14.9 10 18 993 1002 979 1003 0.70 10 11 1.8e-07 0.0042 18.4 13.7 1 17 1039 1055 1039 1065 0.92 11 11 1.8e-07 0.0043 18.4 14.0 1 19 1071 1090 1071 1090 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTGAATCAGCAAACGCCGTTATCACAGATTTGGCAAGGTGCATTTTGTAATGCTTTAAGTTCTGCCATCGAAGACGAAGAGGTCCgaaagcagcaacaacaacagcacaaTACTCTATTGGGAATTCCTAACCATTCTGCAAGCATGTCAGCAATGAAcggcagcaacagcaacaacaataattttACTGCATTTGGTGGCATTGGAAGTACAGATGAAAGAGATGGGGGCGCGGCAATGGCGGCCACAGCACCTCAAAACAATTATGTTAATTTCAATCAATTCATTATGCAGCATAATTTATTGGGCAATAGTAATAATTTTGGTTTAAATGGTGGAGGTAGTGGCGGCATTGTCATTGGAAATGATAATGGTAATATAGGTGCCGTTGGTGGGCGCAGTGCTGGTGCTGGCAACATCACAACTAATGTAGCCGGCCCCACCAATTTAATTGCAAATGGTGTTAACGCTGTTCGCAACGAGAGTGTCAATAATGAATATTTCAACTTTGGCGGATCTATGAACACTAAGTTGCAAAATGGATCGAATGATGGTTTTCTGGATGCTGGAGTATACTCCGCAGATCTTTTCTCAAACAGTCTATTTTCGCCATACAACAACATCAGTAGCAGCAGTAGTCTTTATTCCAACAATGGCCTCGGCAATAACGATGACAGGGATTATAACtcatataataatacaaataGAAATTTGAATTATTTTGACAATATTTATACGCCATTTGGCGACAATGGCGGCTACTATATGAATCCCTTTGCAACTGGCTTTGACTTTAACccatcaaatttaaaaatttctgcGCCTGAATTTGTGCCACGTTTCAATGATCTTAGCTTAAATGAGCAAAAGTCTGTAAAATCAGATGCCAAACCAAACAATGAGCAATCAAATAATGAAAGTAATAACATTAATAAGCAAGAGGTGAAAGTGAATGCTAACAGTGACGATTTATGCTCTGCTCTACGTTCTGATGCTAATGACGATGATGGCGTCAATACAGAGCCGATGCACGAACGCCAAGAAGatataataaaagaaaatgaAGAATCTCCAACATCGTCTCAACAAATGGAATCACTTTTGAAGGACAAACAACCTGAGCACTGCGACGATTTTAACGAAAACAAATATGCAACCAAATGCCCGAGCATGCAAACAAACACAAACCCATTCAATCCAACTGCAGCTCAACAAACTTCAAACttaattagtagaactaactcACGTTATACTGGTACGACAAATAAGCAACAATCATACAGTGGTAATGGCTCTCGTGTCTCATCGACGAATGGGTTTACCAGAAATGCCAGCGATTACCACAGCTCACCTCACCATCGTGAACGTTACGGTGATGGTGGTAATGGTGATGCAATTAAGCTAACTAATGATGTATGTGTTGAAGGGAAATTCGAGAAACCTTCGGCGCGTGCTGAACGAGAGCGCGAACGCGATCGAGATGCACGTCGCTATCAAAACGGACGGCGTTCTGTCGATTATCATCGCAGCAATAAGCGACGTGATGATTGGAATCGTAATCGCGATCGTATAAATGGGTTTCGTGTAGAAGAGAAATACTCAATGGACAATGGAAAGGATAGTCCACTTCCGTCCCCAGAAAAGAAACCATCTCCGAAAAAAATCTACCCAGAGAATGAGAAACTATCACAGCGTGAAAAGCTCATACGCGACATTGAAACTCGCCGATTGGAGTGTTTGGTTTGCGTAGAACAAATCAAAGCCCATCACGGAGTTTGGTCCTGCAACAACTGCTATCACGTACTTCATTTGCAGTGCATCATCAAATGGGCTTCATCGTCGAAGTCAGATGACGGTTGGCGTTGTCCCGCTTGTCAGAATGTAGTCAAGGAGGTACCACGAGACTACTATTGCTTCTGTGGAAAAGTTAAGAATCCACCATACACTCGCCACGACATCGCGCATTCATGCGGAGATACTTGCCGACGCGTTGAAGGCTGTGTACACGCGTGCACGCTACTCTGTCACCCAGGGCCATGTCCACCATGTCAGGCTTATGTGAAGCGTGAATGTGGCTGCGGCAAGACAACCCAAACCATGCAATGCTGCCTTAAAGAGCCCGTAGAGTGTGATTCGAAATGCGGCAAGCTATTGAATTGTGAGTTGCACACATGTTCGGCTAAATGTCATGAAGGCAAATGCCAGCCTTGTACCGAGAAGGTGAACCAACAATGTCATTGCGCCAAACAGGAACGACAAGTGGCTTGCACACGTGACTCGCACGATAAGCACTCCTACTCGTGTGGGAAACCGTGTGGTAAAGATTTGTCTTGTGGTAATCACAAATGCCGTGATTGCTGTCATCCGGGTGAATGTCGCCCTTGTAAGCTAAGTCCCGATGAAGTGACTTCATGTCCGTGCGGAAAAATGCCAATCATTGCAGGTCAAAGAAAATCTTGCTTGGATCCCATACCAGTGTGCGAGGGCGTTTGCGGCAAGACATTGCGTTGCGGCAAGCCGGCACATCCACACCATTGCACCAGCAAATGTCACCTGGGAAACTGCCCACCATGCAACAAACAGACTGCCGTCAAATGCCGTTGCGGTCACATGGACCAATTGATTAAATGTCGCCAGCTATCGACTCGCGCCGACGATGCCCGTTGCAAAAAGCGCTGTGTAAAGAAACGCTCATGTGGCAAACACAAATGCAACCAGGAATGTTGCATTGATATCGATCACATATGTCCATTGCCTTGCAATTATACGCTGTCGTGCGGCAAACACAAATGCGACCAACCCTGCCATCGCGGCAATTGCCCGCCATGCTATCGCTCCTCTTTCGATGAGCTATATTGCGAATGTGGCGCCGAAGTCATTTATCCACCAGTGCCTTGTGGCACCAAGCGGCCTGCTTGTAAGCGTCCTTGCTCGCGCTCTCACCCCTGTCAACATCCACCCCAGCACAATTGCCACTCGGCAGCCACCTGTCCGCCGTGCATGATGTTCACCACCAAATGGTGTTTTGGTCAGCATGAACAACGCAAGACCATTCCATGTTCGCAGGAGAGTTTCAGTTGTGGCTTGGCATGTGGTAAGGCGTTGGTGTGTGGACGACATAAATGTATCAAGACATGTCACGAAGGTGCTTGCCAAACAGCCGGTGAGATTTGCAAGCAGCAATGCCCGAAATTACGCGCCACTTGCGGCCACAAGTGCATGGCGCCATGTCATGAAGGCGATTGTCCGGACACACCATGCAAAGAAATGGTTGAGGTTCAATGCGAATGCGGCAACCGTAAGCAAATGCGTGCATGCCACGATTTGGCACGTGAATTTAGTCGCATTGCCACTGCCCAATTGGCTTCTTCAATGGCCGAAATGCAACGTGGAAATTATATGGAATTAAGCGAAATCCTAGCACccgttaaaataaataagacaAATAAAACCTTGGATTGTAGTGACGAATGCCGTGTTTTGGAACGCAATCGTCGTCTCGCTATTGGTCTACAAATTCGCAATCCCGACGTACCGCAAAAACTTCAAACCAAATATTCAGATTTTATACGCAATTTTGCCAAACGTGATCTAGCATTGGTAAAATCAGTACATGATGCTCTAACTGATTTGGTTAAGCTGGCCAAAGAGAGCAAGCAAAAGTCGCGCAGTCATTCATTTCCGACAATGAATCGTGAGAAACGTCAACTGGTGCATGAAATGTGCGAAATGTTTGGTGTCGAATCAGTCGCCTACGATGCAGAGCCGAATCGAAATGTGGTAGCTACCGCCTATAAAGAACGATCTTGGTTACCTGCCACCAGCATTATAGAGGTCATCCAACGTGAATCCGGTCAACGTCGAGTCCCGGTACCAAGCAATAACGCTTGGGGTATGAAGAGATAA
- Protein Sequence
- MSVNQQTPLSQIWQGAFCNALSSAIEDEEVRKQQQQQHNTLLGIPNHSASMSAMNGSNSNNNNFTAFGGIGSTDERDGGAAMAATAPQNNYVNFNQFIMQHNLLGNSNNFGLNGGGSGGIVIGNDNGNIGAVGGRSAGAGNITTNVAGPTNLIANGVNAVRNESVNNEYFNFGGSMNTKLQNGSNDGFLDAGVYSADLFSNSLFSPYNNISSSSSLYSNNGLGNNDDRDYNSYNNTNRNLNYFDNIYTPFGDNGGYYMNPFATGFDFNPSNLKISAPEFVPRFNDLSLNEQKSVKSDAKPNNEQSNNESNNINKQEVKVNANSDDLCSALRSDANDDDGVNTEPMHERQEDIIKENEESPTSSQQMESLLKDKQPEHCDDFNENKYATKCPSMQTNTNPFNPTAAQQTSNLISRTNSRYTGTTNKQQSYSGNGSRVSSTNGFTRNASDYHSSPHHRERYGDGGNGDAIKLTNDVCVEGKFEKPSARAERERERDRDARRYQNGRRSVDYHRSNKRRDDWNRNRDRINGFRVEEKYSMDNGKDSPLPSPEKKPSPKKIYPENEKLSQREKLIRDIETRRLECLVCVEQIKAHHGVWSCNNCYHVLHLQCIIKWASSSKSDDGWRCPACQNVVKEVPRDYYCFCGKVKNPPYTRHDIAHSCGDTCRRVEGCVHACTLLCHPGPCPPCQAYVKRECGCGKTTQTMQCCLKEPVECDSKCGKLLNCELHTCSAKCHEGKCQPCTEKVNQQCHCAKQERQVACTRDSHDKHSYSCGKPCGKDLSCGNHKCRDCCHPGECRPCKLSPDEVTSCPCGKMPIIAGQRKSCLDPIPVCEGVCGKTLRCGKPAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQLIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFDELYCECGAEVIYPPVPCGTKRPACKRPCSRSHPCQHPPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACGKALVCGRHKCIKTCHEGACQTAGEICKQQCPKLRATCGHKCMAPCHEGDCPDTPCKEMVEVQCECGNRKQMRACHDLAREFSRIATAQLASSMAEMQRGNYMELSEILAPVKINKTNKTLDCSDECRVLERNRRLAIGLQIRNPDVPQKLQTKYSDFIRNFAKRDLALVKSVHDALTDLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKERSWLPATSIIEVIQRESGQRRVPVPSNNAWGMKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -